Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060372.seq
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       53   2e-09
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 30/80 (37%), Positives = 42/80 (52%)
 Frame = +1

Query: 334 EEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKX 513
           ++Y N  +V VSG      I+ FE A   + V   +K  GYK+PTP+Q   L      + 
Sbjct: 177 DKYDNI-QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRD 235

Query: 514 LVGRTQTGSGKTLAYILAAI 573
           L+   QTGSGKT A+ +  I
Sbjct: 236 LMACAQTGSGKTAAFAVPII 255


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 256 NPIWATHVLTSREXFFP 206
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 256 NPIWATHVLTSREXFFP 206
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,084
Number of Sequences: 438
Number of extensions: 3406
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)