Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060372.seq
(680 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 109 2e-24
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 97 1e-20
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 97 1e-20
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 84 9e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 69 2e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 69 3e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 69 4e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 69 4e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 69 4e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 4e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 7e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 53 2e-07
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 52 4e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 50 1e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 49 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 2e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 44 1e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 1e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 43 2e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 43 2e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 42 3e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 42 4e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 42 4e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 42 4e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 5e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 41 7e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 9e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 41 9e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 39 0.003
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 39 0.004
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 38 0.005
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 38 0.006
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 38 0.006
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 38 0.006
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 37 0.014
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 36 0.019
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 36 0.019
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.019
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 36 0.025
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 36 0.033
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 35 0.043
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 35 0.043
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 35 0.057
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 35 0.057
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 35 0.057
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 35 0.057
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 35 0.057
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 34 0.076
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 34 0.076
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 34 0.10
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 33 0.23
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 32 0.40
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 0.71
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 31 0.93
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 29 3.8
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 29 3.8
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 29 3.8
At2g33420.1 68415.m04096 expressed protein 28 5.0
At2g25460.1 68415.m03049 expressed protein 28 5.0
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.6
At5g43990.2 68418.m05382 SET domain-containing protein identical... 27 8.7
At5g43990.1 68418.m05383 SET domain-containing protein identical... 27 8.7
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 27 8.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 109 bits (261), Expect = 2e-24
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Frame = +1
Query: 241 SPR-LGSVSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANF 417
SPR L L PF KNF P V + E EEYR E+TV G + ++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 418 PDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
PDYV + VK G+ EPTPIQ+Q + + L+G +TGSGKTL+Y+L AIVH+N QP
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQP 165
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 485 GWPIAMSGRX*LGVLKRVPAKRWPTSWQPLCT*TTNRPISET*WSDLLWVLAPTRELAQQ 664
GWP+AM GR +G+ + K + P +P+ ++ VLAPTRELA Q
Sbjct: 129 GWPMAMKGRDLIGIAETGSGKTL-SYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQ 187
Query: 665 IR 670
I+
Sbjct: 188 IQ 189
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 96.7 bits (230), Expect = 1e-20
Identities = 45/117 (38%), Positives = 70/117 (59%)
Frame = +1
Query: 244 PRLGSVSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPD 423
P+ +L F KNF PTV + + YR +++V G + ++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 424 YVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+ + + +G+ EPTPIQAQ + + L+G +TGSGKTLAY+L A+VH++ QP
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP 231
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 485 GWPIAMSGRX*LGVLKRVPAKRWPTSWQPLCT*TTNRPISET*WSDLLWVLAPTRELAQQ 664
GWP+A+ GR +G+ + K P + +P ++ +LAPTRELA Q
Sbjct: 195 GWPMALKGRDLIGIAETGSGKTL-AYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQ 253
Query: 665 IR 670
I+
Sbjct: 254 IQ 255
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 96.7 bits (230), Expect = 1e-20
Identities = 45/117 (38%), Positives = 70/117 (59%)
Frame = +1
Query: 244 PRLGSVSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPD 423
P+ +L F KNF PTV + + YR +++V G + ++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 424 YVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+ + + +G+ EPTPIQAQ + + L+G +TGSGKTLAY+L A+VH++ QP
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP 231
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 485 GWPIAMSGRX*LGVLKRVPAKRWPTSWQPLCT*TTNRPISET*WSDLLWVLAPTRELAQQ 664
GWP+A+ GR +G+ + K P + +P ++ +LAPTRELA Q
Sbjct: 195 GWPMALKGRDLIGIAETGSGKTL-AYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQ 253
Query: 665 IR 670
I+
Sbjct: 254 IQ 255
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 83.8 bits (198), Expect = 9e-17
Identities = 38/113 (33%), Positives = 62/113 (54%)
Frame = +1
Query: 256 SVSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQ 435
S+ +P NK+F + ++ + E +YR + VSG + H ++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 436 GVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+K Y++PT IQ Q L + ++G +TGSGKT A++L IVHI +QP
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQP 294
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/112 (30%), Positives = 56/112 (50%)
Frame = +1
Query: 259 VSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQG 438
+ +PF KNF + + + YR E+ V G + IQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 439 VKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+K + Y++P PIQAQ L + +G +TGSGKTL ++L + HI +QP
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 462
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/59 (38%), Positives = 29/59 (49%)
Frame = +2
Query: 491 PIAMSGRX*LGVLKRVPAKRWPTSWQPLCT*TTNRPISET*WSDLLWVLAPTRELAQQI 667
PI MSGR +GV K K P+ ++P E + V+APTREL QQI
Sbjct: 428 PIIMSGRDCIGVAKTGSGKTLGFVL-PMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/112 (29%), Positives = 56/112 (50%)
Frame = +1
Query: 259 VSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQG 438
+ +PF KNF + + + E YR E+ V G + I+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 439 VKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+K + Y++P PIQ Q L + +G +TGSGKTL ++L + HI +QP
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 595
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/59 (38%), Positives = 29/59 (49%)
Frame = +2
Query: 491 PIAMSGRX*LGVLKRVPAKRWPTSWQPLCT*TTNRPISET*WSDLLWVLAPTRELAQQI 667
PI MSGR +GV K K P+ ++P E + V+APTREL QQI
Sbjct: 561 PIIMSGRDCIGVAKTGSGKTLGFVL-PMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/96 (35%), Positives = 50/96 (52%)
Frame = +1
Query: 295 PHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPI 474
P P+ S E Y HE+TVSG + + FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 475 QAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
QAQ + + +V +TGSGKTL Y++ +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/96 (35%), Positives = 50/96 (52%)
Frame = +1
Query: 295 PHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPI 474
P P+ S E Y HE+TVSG + + FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 475 QAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
QAQ + + +V +TGSGKTL Y++ +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/96 (35%), Positives = 50/96 (52%)
Frame = +1
Query: 295 PHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPI 474
P P+ S E Y HE+TVSG + + FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 475 QAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
QAQ + + +V +TGSGKTL Y++ +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 61.7 bits (143), Expect = 4e-10
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +1
Query: 277 NKNFXDPH----PTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVK 444
NK+ PH P V SP E YR HEVT +G FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 445 TMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIV 576
+ G+ PTPIQAQ + + +V +TGSGKTL Y++ A +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/90 (33%), Positives = 46/90 (51%)
Frame = +1
Query: 307 VLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQX 486
V K S + + R +TV+G + I+ F + FP + + +K G PTPIQ Q
Sbjct: 68 VRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 487 LADSYVWKXLVGRTQTGSGKTLAYILAAIV 576
L + ++G TGSGKTL ++L I+
Sbjct: 128 LPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/90 (32%), Positives = 46/90 (51%)
Frame = +1
Query: 307 VLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQX 486
+ K S + + R + V+G + I+ F++ FP V +K G +PTPIQ Q
Sbjct: 117 IRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQG 176
Query: 487 LADSYVWKXLVGRTQTGSGKTLAYILAAIV 576
L + ++G TGSGKTL ++L I+
Sbjct: 177 LPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/85 (27%), Positives = 45/85 (52%)
Frame = +1
Query: 340 YRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLV 519
+R ++ G ++ +EE+ + + V+ GYK+P+PIQ + + ++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 520 GRTQTGSGKTLAYILAAIVHINNQP 594
G +TGSGKT A++L + +I+ P
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLP 379
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.0 bits (114), Expect = 1e-06
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +1
Query: 328 EXEEYRNXHEVTVSGVEX--HNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSY 501
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 502 VWKXLVGRTQTGSGKTLAYILAAIVHI 582
+ L+G +TGSGKTLA+ + AI+H+
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/78 (35%), Positives = 40/78 (51%)
Frame = +1
Query: 361 TVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGS 540
TV GV H F E N + + +T+GYK+PTPIQA + + + L TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 541 GKTLAYILAAIVHINNQP 594
GKT A+ L + + +P
Sbjct: 216 GKTAAFALPTLERLLFRP 233
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
FE + D + +K MG+ T IQA+ + + + ++G +TGSGKTLA+++ A+
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/79 (35%), Positives = 38/79 (48%)
Frame = +1
Query: 328 EXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVW 507
E EE RN E E + FEE + + + G ++PT IQ +
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 508 KXLVGRTQTGSGKTLAYIL 564
K +V R +TGSGKTLAY+L
Sbjct: 84 KDVVARAKTGSGKTLAYLL 102
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE ++ + K +G ++PTP+Q + + ++G QTGSGKT A+ L +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 580 INNQP 594
+ P
Sbjct: 120 LAEDP 124
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQPA 597
P+++ ++ +G+ PT IQ + L + + + QTGSGKTL Y+L IN Q +
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 598 YFGDVMV 618
V+V
Sbjct: 144 SVQAVIV 150
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
F P + ++T GY PTPIQ Q + + K L+ TGSGKT ++++ I
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +1
Query: 376 EXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLA 555
E + ++ F E + + + + +G+K P+ IQA+ L + K ++G QTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 556 YIL 564
+ +
Sbjct: 63 FAI 65
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
F+ + + +K MG++ T IQA + K ++G +TGSGKTLA+++ A+
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYIL 564
FE N V +K GYK PTPIQ + + +V +TGSGKT A+++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLI 84
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKT--LAYIL 564
I+ F++ D V +GV GYK+P+ IQ + L + ++ + Q+G+GKT +A +
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 565 AAIVHINNQ 591
IV+I+++
Sbjct: 81 CQIVNISSR 89
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +1
Query: 343 RNXHEVTVSGVEXHNXIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQXLADSYVWK 510
R + + VSG ++ F E + Y+ + + +G+KEPTPIQ Q + +
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 511 XLVGRTQTGSGKTLAYILAAIVHI 582
TGSGKT A+I ++ +
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKL 203
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FEE PD + ++ G+ PT +Q+ + V ++ TGSGKTLAY+L +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 580 I 582
I
Sbjct: 172 I 172
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.7 bits (91), Expect = 9e-04
Identities = 16/67 (23%), Positives = 38/67 (56%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAA 570
++ F + D ++G+K Y + T +Q+ + + + ++G +TGSGKTLA+++
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 571 IVHINNQ 591
+ ++ +
Sbjct: 130 LEKLHRE 136
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +1
Query: 439 VKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
V + G+ P+PIQAQ + + +V +TGSGKTL Y++ +H+
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL 291
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Frame = +1
Query: 265 LQPFNKNFXDPHPTVLKR--SPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQG 438
+ PF + +P P ++ + + Y + + SG + F E + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLN 173
Query: 439 VKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
++ Y +PTP+Q + + L+ QTGSGKT A+ I
Sbjct: 174 IRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPII 218
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQPA 597
+++ +K G + PIQA LVGR +TG GKTLA++L + + N PA
Sbjct: 107 LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPA 163
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +1
Query: 271 PF-NKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKT 447
PF N DP + + E Y + + SG + F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 448 MGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
Y +PTP+Q + + L+ QTGSGKT A+ I
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPII 205
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAA 570
++ F+E + V ++ + + PT IQ + K +V + TGSGKTLAY+L
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 571 IVHINNQPAYFG 606
+ + A G
Sbjct: 171 VQLMREDEANLG 182
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 358 VTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTG 537
V SG + + F + + D + ++ Y PTP+Q + + L+ QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 538 SGKTLAYILAAI 573
SGKT A+ I
Sbjct: 199 SGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 358 VTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTG 537
V SG + + F + + D + ++ Y PTP+Q + + L+ QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 538 SGKTLAYILAAI 573
SGKT A+ I
Sbjct: 199 SGKTAAFCFPII 210
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQXL-ADSYVWKXLVGRTQTGSGKTLAY 558
+ + + + +KEPT IQ +Y K ++G +TGSGKTLA+
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAF 245
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE+ + G+ G++ P+PIQ + + + + ++ R + G+GKT A+ + +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 580 IN 585
I+
Sbjct: 193 ID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE+ + G+ G++ P+PIQ + + + + ++ R + G+GKT A+ + +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 580 IN 585
I+
Sbjct: 193 ID 194
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 448 MGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
MG++ PT +QAQ + + ++ TG+GKT+AY+ I H+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHL 92
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F++ +G++ G+K T +Q L K ++ + +TG+GKT+A++L +I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 580 INNQP 594
+ P
Sbjct: 142 VIKAP 146
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F E + + + +K + P IQA + K + Q+GSGKTLAY++ I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 580 INNQ 591
+ +
Sbjct: 436 LREE 439
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 451 GYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQPAY 600
G++ TP+QA+ + K +V TGSGKTLA++L I I +Y
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 84
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 451 GYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQPAY 600
G++ TP+QA+ + K +V TGSGKTLA++L I I +Y
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 85
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+ +K GY+ T +Q L K ++ + +TG+GKT+A++L +I + P
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSP 120
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+ +K G++ T +Q L K ++ + +TG+GKT+A++L AI + P
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSP 448
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE+ + +G+ G+++P+PIQ + + + ++ R + G+GKT A+ + +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 580 IN 585
I+
Sbjct: 186 ID 187
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE+ + +G+ G+++P+PIQ + + + ++ R + G+GKT A+ + +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 580 IN 585
I+
Sbjct: 186 ID 187
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE+ + +G+ G+++P+PIQ + + + ++ R + G+GKT A+ + +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 580 IN 585
I+
Sbjct: 216 ID 217
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 412 NFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQ 591
+ P +++ ++ G PIQ L + + ++ R +TG+GKTLA+ + I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAY 558
+ + +K G ++ PIQ L + + ++GR +TG+GKTLA+
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAF 170
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQPAYFG 606
+ + + + G ++ PIQ L + + ++GR +TG+GKTLA+ + I I A G
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 361 TVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGS 540
T G+E I F + + V +GV G+++P+ IQ + + + ++ + Q+G+
Sbjct: 27 TTDGIEP---ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 541 GKT 549
GKT
Sbjct: 84 GKT 86
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 31.9 bits (69), Expect = 0.40
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Frame = +1
Query: 277 NKNFXDPH---PTVLKRSPYEXEEYRNXHEVTVSGVEXHNXI---QYFEEANFPDYVQQG 438
N+N D P + R + + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 439 VKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
+ G + T +Q L++ K + + +TG+GK++A++L AI
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 421 DYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINN 588
D V ++ G+ P+ QA + K ++ +TGSGKT Y+ I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
F+E+ + + G + T +Q L++ K + + +TG+GK++A++L AI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 466 TPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
TP+QA + +K + TGSGKTLA+++ +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/53 (20%), Positives = 28/53 (52%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAY 558
F+ + + +G+ G+++P+ IQ + + ++ + Q+G+GKT +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/53 (20%), Positives = 28/53 (52%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAY 558
F+ + + +G+ G+++P+ IQ + + ++ + Q+G+GKT +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 22 SKRIHSLNKHLQLNPKI 72
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 158 ETNYRRICCLLQIWNXRFHGYY 93
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 22 SKRIHSLNKHLQLNPKI 72
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 238 ASPRLGSVSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANF 417
ASP LGS +L+ + N + P +L P E + E+ ++ VE I ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 418 PDYVQQGVKTM 450
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 238 ASPRLGSVSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANF 417
ASP LGS +L+ + N + P +L P E + E+ ++ VE I ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 418 PDYVQQGVKTM 450
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAY 558
PD ++ G+ G+++P+ IQ + + ++ + Q+G+GKT +
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,290
Number of Sequences: 28952
Number of extensions: 252856
Number of successful extensions: 580
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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