Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060371.seq
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    26   5.6  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   5.6  
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2...    26   5.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.4  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   9.7  

>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 58  INQLLKKNYKNLHNA 14
           +N+L+ K+Y NLHNA
Sbjct: 163 LNELVDKSYHNLHNA 177


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -1

Query: 597 FVLLSCLVWPVCCTSAXD--QFPLPDEPDAPELSYE 496
           F+LL  + W  C        +F LPD  D P L Y+
Sbjct: 64  FLLLDSISWIPCTCKILKLKEFELPDRFDIPNLFYD 99


>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 225 RSNG*NVVIAQVIKNSQKTEKSTSLSLNK 311
           +SN  NVV  Q IK  +KTE  T+L  NK
Sbjct: 155 QSNHSNVVKNQPIKLCKKTEGGTNLDHNK 183


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = -1

Query: 381 KYFSTLGINNPYM-YQRNLDDDVRTYLMINLCFFLFSDYSLLLEQLPHFNHLIVSRHPHQ 205
           K +  +G+N  ++ YQ+ L   +   + +     + + ++LLLEQ  H  HL+V      
Sbjct: 551 KSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALLLEQGHHGPHLVVVPSSTL 610

Query: 204 HKQLSNFSR-CP-LRKFRIFMNYKSRLN 127
              L   +R CP LR    + + + R N
Sbjct: 611 ENWLRELARFCPSLRVEPYYGSQQERAN 638


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 653 PLEPSWLMCREPLDILW 603
           PL  SW  C E LD+ W
Sbjct: 651 PLAGSWSSCAENLDLSW 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,634
Number of Sequences: 5004
Number of extensions: 58623
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)