Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060371.seq
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-7|AAB37074.4|  529|Caenorhabditis elegans Cytochrome p450...    28   6.8  
U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z82058-4|CAB04869.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   9.0  

>U53148-7|AAB37074.4|  529|Caenorhabditis elegans Cytochrome p450
           family protein 32A1 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 381 FVTYLLPVRTPEILRNW*LDTQNRKLSDNASPQDGPTVIRKIILVHL 521
           +V YL+ V   +IL  W +   NRK + N S  +GP  +  +   HL
Sbjct: 11  YVIYLVVVNFQQILELWRI---NRKCAQNLSMVNGPPALPLVGSAHL 54


>U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical
           protein C17G10.7 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 602 FGLFSFR-VWFGXSVALLPSTSSHCLMNQMHQNYLTNNSRPILWAGVIR*FTILGIQLPV 426
           +GL++FR V+   +V L    SS  L   +     T+NS   +W  +   F IL I    
Sbjct: 68  YGLYNFRPVFLSPNVLLKIILSSSALFYGLQMAETTSNSAIFVWLTISIVFFILEIHTMF 127

Query: 425 SENF 414
           S  F
Sbjct: 128 STTF 131


>Z82058-4|CAB04869.1|  197|Caenorhabditis elegans Hypothetical
           protein T27C5.8 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +3

Query: 375 SIFVTYLLPVRTPEILRNW*LDTQNRKLSDNASPQDGPTVIRKIILVHLVHQAVGTGR 548
           S+F+T L  V    I  N  L   NRK +DNA+P   P +   I+    ++  VG  +
Sbjct: 98  SLFITVLTVVGVTLIGVN--LPHMNRKYNDNATPAKTPNLCFTILQGLTMYVTVGNAK 153


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 511  WCIWFIR--QWELVXGRSATDXPNQTRKENKPNHKMSKGSRHIS 636
            WC+ + R  Q EL+  ++ TD     +   K   K S GS+H S
Sbjct: 2239 WCLAYHRPLQRELIPLKADTDREKAVKLRRKEIEKESNGSKHHS 2282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,570
Number of Sequences: 27780
Number of extensions: 325474
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)