Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060371.seq
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64450.1 68418.m08096 hypothetical protein contains Pfam prof...    29   3.6  
At5g42580.1 68418.m05184 cytochrome P450 family protein similar ...    28   6.4  
At5g03770.1 68418.m00341 3-deoxy-D-manno-octulosonic acid transf...    27   8.4  
At4g03190.1 68417.m00436 F-box family protein (FBL18) almost ide...    27   8.4  

>At5g64450.1 68418.m08096 hypothetical protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 181

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 352 VVNS*SGKVFSLLICYPSEHLKFSETGNWI 441
           V+    G+ +++L+  P EH+ F+E+  W+
Sbjct: 115 VIQGLHGRGYNVLLAEPLEHIPFTESSEWL 144


>At5g42580.1 68418.m05184 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max}; similar
           to flavone synthase II (GI:5081817) [Gerbera hybrida].
          Length = 499

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 243 HFNHLIVSRHPHQHKQLSNFSRCPLRKFRIF 151
           H +HL+ S  PH+  Q  +F   PL   RIF
Sbjct: 50  HLHHLLSSSLPHKSFQKLSFKYGPLLHLRIF 80


>At5g03770.1 68418.m00341 3-deoxy-D-manno-octulosonic acid
           transferase-related similar to
           3-deoxy-D-manno-octulosonic acid transferase,
           Escherichia coli, PIR:JU0467; contains Pfam profile
           PF04413: 3-Deoxy-D-manno-octulosonic-acid transferase
           (kdotransferase)
          Length = 447

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 270 YSLLLEQLPHFNHLIVSRHPHQHKQLSN 187
           +++LLE  P    +IV RHPH  +Q+++
Sbjct: 262 HNMLLESHPDSVVIIVPRHPHHGQQIAH 289


>At4g03190.1 68417.m00436 F-box family protein (FBL18) almost
           identical to GRR1-like protein 1 GI:12658970 from
           [Arabidopsis thaliana]; similar to leucine-rich repeats
           containing F-box protein FBL3 (GI:5919219) [Homo
           sapiens]; similar to F-box protein FBL2 (GI:6063090)
           [Homo sapiens]
          Length = 585

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 306 LMINLCFFLFSDYSLLLEQLPHFNHLIVSRHPHQHKQLSN 187
           L ++ CF  F    LL +++P  N  ++  HP + +  S+
Sbjct: 507 LWMSSCFVSFGACKLLSQKMPRLNVEVIDEHPPESRPESS 546


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,031
Number of Sequences: 28952
Number of extensions: 290216
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)