Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060370.seq
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    31   0.14 
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    31   0.18 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.32 
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    28   0.97 
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    27   1.7  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   3.9  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    26   5.2  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   6.8  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +2

Query: 308 SRQRARSNRTADILFEQF*TRNFSRHVGLLANYFGPL*TFHEKRKTAA 451
           S + A SN   D LF    TR+    V LLA     +  F+EKRKT A
Sbjct: 437 SIRTAVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLA 484


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -2

Query: 515 SHKFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVLRNFSFKIVQREYL 339
           SH F++ P+D V +R  +  D  ++ VS EM+  A + ++    +  +     + ++Y+
Sbjct: 340 SHSFVISPNDIVYVRERNQIDHVKYLVSKEMYAEAIDAVKKLPEIPPSLQISELAKKYI 398


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 258  PAFSPVLNQWERLLMESPASIILTASSKVQLPIFQNAAXPSRPV 127
            P  +P+ NQ+ ++ +E P    +  S K Q+P   N   P  PV
Sbjct: 1339 PQQAPLENQFSKMSLEPPVRPAVPTSPKPQIPDSSNVHAPPPPV 1382


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 502 INLCDNLCAQNNASKRARRIGASFVGSGEKIYSFEQ 609
           IN C + CA N  ++ A ++ + FV   ++++  EQ
Sbjct: 556 INYCRHKCAPNLDAEAAEKLSSQFVAIRKRVHQSEQ 591


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -2

Query: 509 KFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVL 378
           K+ +  +D+V      +G  ++  VS+    AAQN+ +AAQ+VL
Sbjct: 27  KYGLKSNDAVLASESQMGIYKEPCVSYSAGGAAQNSCRAAQYVL 70


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 518 LSHKFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQN 405
           L   FIV P  S   R++  GDV  F +S E  +   N
Sbjct: 222 LQRGFIVLPKSSTPRRIKENGDVFDFEISKEDMEKLYN 259


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 256 GASTITSVKCWSKSTRWFPSACAFK 330
           G +T  ++ CW  STR   S+ AF+
Sbjct: 322 GFATRPTIACWDNSTRGLDSSTAFE 346


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 544 SMHYSVHISYHTNLLYHHPTASLLGLNTLAMCSSFPFLMKCSKRPKII 401
           S+  S+HI + T LLYH    +   +N+L +      L++  K+P ++
Sbjct: 148 SIRLSIHIMHFTCLLYHGSVRNRWLMNSLLLDGLRDLLVE--KQPSVV 193


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 264 DDNVRKVLEQIDAVVPVSV-RVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHFMRNG 440
           D  + K+   I+     SV R       F+ NN     +Q++L C++I+LG+ E      
Sbjct: 85  DSEINKITHIINFAAESSVDRSFIDPLYFTKNNILS--TQNLLECVRILLGKKEELRNRL 142

Query: 441 KLLHIA 458
             +H++
Sbjct: 143 NFVHVS 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,044
Number of Sequences: 5004
Number of extensions: 48111
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)