Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060370.seq
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0507 + 10044073-10044576                                         29   2.3  
03_02_0586 + 9665148-9665867                                           29   3.0  
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472...    28   5.3  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     28   7.0  
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151     28   7.0  
11_08_0026 + 27752519-27755441,27755538-27755923                       27   9.3  
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20...    27   9.3  

>09_02_0507 + 10044073-10044576
          Length = 167

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 527 AHKLSHKFIVPPSDSVAIRVE-HVGDVQQFSVSHEMFKAAQNNL 399
           +HK  H+F+ P +D+VAI  + ++G+V  F +   +   AQ +L
Sbjct: 5   SHKTLHEFVAPSADNVAIGPQINLGEV-DFDLKSSLITMAQASL 47


>03_02_0586 + 9665148-9665867
          Length = 239

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +3

Query: 204 RAIPSKAFPIGSAPAKTRGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFEREISQD 383
           R +  + FP+G  P K  G    VRKV E I      +VR Q  R + S  + ER +++ 
Sbjct: 49  RVVVRRHFPVGPNPTKGAGGAVIVRKVAEDI------AVRRQPSRGLRSPESVERVLAER 102

Query: 384 ML 389
           +L
Sbjct: 103 VL 104


>07_03_0378 +
           17446311-17446514,17446814-17446927,17447124-17447242,
           17447595-17447641,17447720-17447820,17450769-17450840,
           17451290-17451403,17451495-17451500,17451501-17451611
          Length = 295

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 234 QWERLLMESPASIILTASSKVQLPIFQNAAXPSRPVXXHTYRLRTXLIGIPEL 76
           +W  L ++SP +++L   SK  L +  NA   + P    T  +    +GIP +
Sbjct: 179 RWRSLPLQSPVAVLLHWDSKPHLIVAPNAGIAAYPSWIPTIEI-IRKVGIPAI 230


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -2

Query: 431  HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 261
            H +  A   NL    +   N  F+ +  EY+P+G L A  H++G  ++  L+   D+++D
Sbjct: 846  HVLRMARHRNLIKILNTCSNLDFRALVLEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 904


>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
          Length = 124

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 89  PIRXVRKRYVCXXTGRDGYAAF*KIGSCTFDEAVKMIDAG 208
           P R V+KR +   T R G     K     +DE VK+ DAG
Sbjct: 6   PHRKVKKRRLSHKTARRGKFLV-KADDAVYDELVKLADAG 44


>11_08_0026 + 27752519-27755441,27755538-27755923
          Length = 1102

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -2

Query: 431  HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 261
            H +  A   NL    +   N  F+ +  EY+P+G L A  H++G  ++  L+   D+++D
Sbjct: 850  HVLRMARHRNLIKILNTCTNLDFRALILEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 908


>01_01_0026 +
           201042-201110,201252-201359,202511-202639,203164-203440,
           203543-203647,203730-203875,204042-204149,204290-204378,
           204552-205098
          Length = 525

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 216 SKAFPIGSAPAKTRGIDDNVRKVLEQIDA 302
           S+A P   +P K  G+DD   ++LE+++A
Sbjct: 433 SRANPKLPSPVKPLGLDDKTSRILERLEA 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,736,632
Number of Sequences: 37544
Number of extensions: 324848
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)