Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060370.seq
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         29   4.1  
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               28   7.2  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)            27   9.5  
SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 255  RGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFS--LNNFEREISQ-DMLGCLQIILGRFEH 425
            + + +N  +  +Q+D VVPV+       Q+F   L N E+ +S  D + C +  L R E 
Sbjct: 2000 KSVKENFDEKKDQLDEVVPVAKAYHDLSQMFQEWLQNAEKYLSTLDPISCDEKSLAREER 2059

Query: 426  FMRNGKLLHIANVFNPNSDAV 488
             +    +L  A    PN D++
Sbjct: 2060 SLEG--ILATAEDHKPNLDSL 2078


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 518 LSHKFIVPPSDSVAIRVEHVGDVQQFSVSH 429
           LSH F  PP  ++AI   + G+V   S SH
Sbjct: 255 LSHAFPTPPLSTIAIGTRYNGNVTSASKSH 284


>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 550 HASMHYSVHISYHTNLLYHHPTASL 476
           H   H +VH  YH    +HHP +SL
Sbjct: 55  HHRQHITVHHHYHHYHHHHHPPSSL 79


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 472 GLNTLAMCSSFP-FLMKCSKRPKIICKQPN 386
           G+ ++A C   P  LM C+K  +I+C  PN
Sbjct: 263 GILSIAWCPQDPDLLMSCAKDNRILCWNPN 292


>SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)
          Length = 284

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 301 RWFPSACAFKPDGRYSL 351
           RW PS   F+PDG+Y+L
Sbjct: 33  RWRPSTDFFEPDGQYNL 49


>SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 301 RWFPSACAFKPDGRYSL 351
           RW PS   F+PDG+Y+L
Sbjct: 33  RWRPSTDFFEPDGQYNL 49


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -3

Query: 466 NTLAMCSSFPFLMKCSKRPKIICKQPNMS*EISRSKLFKENICRPV*TRTLTGTTASICS 287
           +T ++C S    M    R  I+C+    +  +SRS + + ++ R        G T+S+C 
Sbjct: 361 HTQSVCRSVIHRMSVD-RSYIVCQSIGYTSYVSRSVIHRLSVDRSYTVSPSIGHTSSVCR 419

Query: 286 NTLRTLS 266
           + +  LS
Sbjct: 420 SVIHRLS 426


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 394 ACKLFWAALNIS*ETENCCTSPTCS 468
           AC+ ++ A NI    + CC  PTC+
Sbjct: 633 ACRYYYVANNIGECYDLCCQQPTCN 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,677
Number of Sequences: 59808
Number of extensions: 385348
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)