Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060370.seq
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-1|CAA20933.1|  279|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    29   2.1  
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ...    29   2.1  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    29   3.6  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    29   3.6  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    29   3.6  
AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    29   3.6  
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ...    29   3.6  
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass...    28   4.8  
U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    24   9.0  

>AL031621-1|CAA20933.1|  279|Caenorhabditis elegans Hypothetical
           protein F28H6.2 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 179 DEAVK-MIDAGDSIKSLSHWFSTGENAGHRR*RP*SVGANRRGGSRQRARSNRTADI 346
           DE ++ M D G S K +  WF        R  RP +    +R   R+R+R++   D+
Sbjct: 141 DEILEIMADTGLSRKEVRRWFQWRNGTNFRIVRPVTEEQKKRAAERERSRAHLKVDL 197


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 374 NFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVDAP 255
           N   K+++   L +G++ + D NH  +L Q   DVI + P
Sbjct: 503 NVQAKLLKVHVLVNGVSRNPDANHTKELFQLLEDVITEHP 542


>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 3 protein.
          Length = 1603

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 521  KLSHKFIVPPSDSVAIRVEHVGDVQQFSV-SHEMFKAAQNNLQAAQHVLRNFSFKIVQRE 345
            +++HKF+VP +    + V H   V    V  ++  +  +   +   H     S + + R+
Sbjct: 919  EITHKFVVPENKKTTVSV-HTRPVAFIRVPKNQDSEYVETEEKTISHSQYQMSTEEIDRQ 977

Query: 344  YLPSGLNAHADGN 306
            Y   GL  +A GN
Sbjct: 978  YETFGLRINAQGN 990


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 521  KLSHKFIVPPSDSVAIRVEHVGDVQQFSV-SHEMFKAAQNNLQAAQHVLRNFSFKIVQRE 345
            +++HKF+VP +    + V H   V    V  ++  +  +   +   H     S + + R+
Sbjct: 919  EITHKFVVPENKKTTVSV-HTRPVAFIRVPKNQDSEYVEAEEKTISHSQYQMSTEEIDRQ 977

Query: 344  YLPSGLNAHADGN 306
            Y   GL  +A GN
Sbjct: 978  YETFGLRINAQGN 990


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 CTFDEAVKMIDAGDSIKSLSHWFSTGENAGH 262
           CT DE VKM+   D++K +  WFS  EN  H
Sbjct: 337 CTQDE-VKMMGDSDAVKPIDGWFS--ENITH 364


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 521  KLSHKFIVPPSDSVAIRVEHVGDVQQFSV-SHEMFKAAQNNLQAAQHVLRNFSFKIVQRE 345
            +++HKF+VP +    + V H   V    V  ++  +  +   +   H     S + + R+
Sbjct: 919  EITHKFVVPENKKTTVSV-HTRPVAFIRVPKNQDSEYVEAEEKTISHSQYQMSTEEIDRQ 977

Query: 344  YLPSGLNAHADGN 306
            Y   GL  +A GN
Sbjct: 978  YETFGLRINAQGN 990


>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 CTFDEAVKMIDAGDSIKSLSHWFSTGENAGH 262
           CT DE VKM+   D++K +  WFS  EN  H
Sbjct: 379 CTQDE-VKMMGDSDAVKPIDGWFS--ENITH 406


>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 4 protein.
          Length = 1603

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 521  KLSHKFIVPPSDSVAIRVEHVGDVQQFSV-SHEMFKAAQNNLQAAQHVLRNFSFKIVQRE 345
            +++HKF+VP +    + V H   V    V  ++  +  +   +   H     S + + R+
Sbjct: 919  EITHKFVVPENKKTTVSV-HTRPVAFIRVPKNQDSEYVEAEEKTISHSQYQMSTEEIDRQ 977

Query: 344  YLPSGLNAHADGN 306
            Y   GL  +A GN
Sbjct: 978  YETFGLRINAQGN 990


>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 59 protein.
          Length = 1592

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 249 KTRGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHF 428
           + RG+ D + K+ +Q+ A+    +  Q   +IF+  + E+   ++M    + I G  E  
Sbjct: 719 ENRGLRDEIEKLSQQMAALPRGGLNEQQLHEIFNWVSEEKATREEMENLTRKITGEVESL 778

Query: 429 MRNGKL 446
             N  L
Sbjct: 779 KNNSPL 784


>U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical
           protein T20D4.9 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 170 CTFDEAVKMIDAGDSIKSLSHWFS 241
           CT DE VKM+   D++K +  WFS
Sbjct: 303 CTQDE-VKMMGDSDAVKPIDGWFS 325


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 24.2 bits (50), Expect(2) = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 460 LAMCSSFPFLMKCSKRPKII 401
           L  CS+ PF++ C K P ++
Sbjct: 575 LPSCSATPFIIVCIKSPSLL 594



 Score = 21.4 bits (43), Expect(2) = 9.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -3

Query: 361 KLFKENICRPV*TRTLTGTTASICSNTLRTLSSMPRVFAGAEPMGKAFDGIA 206
           KLF++N+      RT+T    + CS        MP+    + P   +  G A
Sbjct: 631 KLFEKNLGAKTTVRTMTDFVEAYCSACEEYQIFMPKYNNESSPEQSSQPGSA 682


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,536
Number of Sequences: 27780
Number of extensions: 281562
Number of successful extensions: 820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)