Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060370.seq
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 249 SPV-LNQWERLLMESPASIILTASSKVQ 169
           SP+ LN+   +L  SPA IIL   SK +
Sbjct: 12  SPLTLNRITHILANSPAIIILGQDSKAK 39


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 249 SPV-LNQWERLLMESPASIILTASSKVQ 169
           SP+ LN+   +L  SPA IIL   SK +
Sbjct: 50  SPLTLNRITHILANSPAIIILGQDSKAK 77


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 445 CCTSPTCSTLIATLSDGGTINLCDNLCAQNNA 540
           C TSP  ++L ++LS         N   Q+N+
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNS 61


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 466 STLIATLSDGGTINLCDNLCAQNNASKRARR 558
           ST  A +SD G  N C N  +Q ++     R
Sbjct: 6   STENAKVSDSGYSNTCSNSQSQRSSGSSISR 36


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 466 STLIATLSDGGTINLCDNLCAQNNASKRARR 558
           ST  A +SD G  N C N  +Q ++     R
Sbjct: 6   STENAKVSDSGYSNTCSNSQSQRSSGSSISR 36


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 551 ARFDALFCAHKLSHKFIVPPSDSV 480
           A+ D L C + L HK  VPP   +
Sbjct: 449 AQDDGL-CPYTLKHKIRVPPGTPI 471


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 145 CGVLKDRQLHL*RSGQDDRRGRFH 216
           C +LKD Q    ++  DD+ G  H
Sbjct: 680 CQLLKDSQYIREQTESDDKEGYLH 703


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +3

Query: 357  NFEREISQDMLGCLQIILGRFEHFMRNGKLL 449
            NF+ + + D +G    +  + EHF+ +  L+
Sbjct: 1600 NFDHDSTNDFVGPKNCLFRKPEHFVASYALI 1630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,597
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)