Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060370.seq
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    29   1.9  
At2g32310.1 68415.m03950 expressed protein                             29   1.9  
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ...    28   4.4  
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    28   4.4  
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    28   4.4  
At1g14290.1 68414.m01694 acid phosphatase, putative similar to a...    27   7.8  

>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 442 NCCTSPTCSTLIATLSDGGTINLCDNLCAQNNASKRARRIGASF 573
           N C S     +  + S GG+++LCD +   NNA++  R+   SF
Sbjct: 231 NYCGSGRVENVRRSFSIGGSLSLCDGI---NNATRSGRQFYTSF 271


>At2g32310.1 68415.m03950 expressed protein
          Length = 325

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = -3

Query: 403 ICKQPNMS*EISRSKLFKENICRPV*TRTLTGTTASICSNTLRTLSSMPRVFAGAEPMGK 224
           +C+  N + +  R     + +  P  T +L    AS  +N     +  P  F   EP+G 
Sbjct: 88  LCETSNRTAQFQRGHFHYQELNTPFATESLNSLLASTEANQ-NLYTVPPHNFGYGEPIGS 146

Query: 223 AFDGIARVYHLDR 185
            ++   R Y L R
Sbjct: 147 LYETSNRTYQLQR 159


>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit, Arabidopsis thaliana (Ath-A)
          Length = 1088

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -2

Query: 593 IFSPLPTNEAPIRRARFDALFCAHKLSHKFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKA 414
           ++S  P +E P+     D     +   H  IVPPS  +  RV HV     F+  H     
Sbjct: 143 LYSASPGSEVPLL-TYCDEDSDMYSDRHALIVPPSTGLGNRVHHVPFTDSFASIHTRPMV 201

Query: 413 AQNNL 399
            Q +L
Sbjct: 202 PQKDL 206


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 484 ASLLGLNTLAMCSSFPFL--MKCSKRPKIICKQPN 386
           A+LLGL T+ + +SFP L    C+ +  + C  PN
Sbjct: 132 ATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166


>At1g27750.1 68414.m03391 ubiquitin system component Cue
           domain-containing protein very low similarity to ASC-1
           complex subunit P100 [Homo sapiens] GI:12061187;
           contains Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 258 PAFSPVLNQWERLLMESPASIILTASSKVQLPIFQNAAXPSRPVXXH 118
           P + P  + W+   + SP+   +  SS++Q P  Q  + P  P   H
Sbjct: 783 PIYPPPNSSWDTRSLISPSGDAVATSSQMQGPPAQQVSGPFMPPPVH 829


>At1g14290.1 68414.m01694 acid phosphatase, putative similar to acid
           phosphatase [Lupinus albus] GI:5360721; contains Pfam
           profile PF01598 sterol desaturase
          Length = 259

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 544 SMHYSVHISYHTNLLYHHPTASLLGLNTLAMCSSFPF 434
           S H+ + + Y    LY+HP   LL L+T+    SF F
Sbjct: 128 SQHHRLIVPYSYGALYNHPLEGLL-LDTIGGALSFLF 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,015
Number of Sequences: 28952
Number of extensions: 254415
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)