Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060369.seq
(666 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 267 1e-70
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 155 7e-37
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 154 2e-36
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 153 4e-36
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 151 1e-35
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 151 2e-35
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 143 3e-33
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 141 2e-32
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 138 8e-32
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 134 2e-30
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 134 2e-30
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 133 4e-30
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 127 3e-28
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 126 4e-28
UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physali... 120 3e-26
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 65 2e-09
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 64 3e-09
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 63 7e-09
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 59 8e-08
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 58 1e-07
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 58 1e-07
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 58 3e-07
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 58 3e-07
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 56 6e-07
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 56 6e-07
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 56 6e-07
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 56 1e-06
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 56 1e-06
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 56 1e-06
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 56 1e-06
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 56 1e-06
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 55 1e-06
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 55 1e-06
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 55 1e-06
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 55 2e-06
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 55 2e-06
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 54 2e-06
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 54 3e-06
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 54 3e-06
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 54 3e-06
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 54 3e-06
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 54 4e-06
UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei... 54 4e-06
UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)... 54 4e-06
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 53 5e-06
UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po... 53 5e-06
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 53 5e-06
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 53 5e-06
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 53 7e-06
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 53 7e-06
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 51 3e-05
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 50 4e-05
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 50 4e-05
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 50 7e-05
UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep: Rep... 49 9e-05
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 48 2e-04
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 48 2e-04
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 48 3e-04
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 48 3e-04
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 44 0.003
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 40 0.054
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 39 0.094
UniRef50_Q6QLN1 Cluster: Non-structural polyprotein; n=40; root|... 38 0.22
UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root... 37 0.38
UniRef50_Q5VI74 Cluster: RNA-dependent RNA polymerase; n=1; Frag... 37 0.50
UniRef50_Q6JE41 Cluster: P2 protein; n=1; Humulus japonicus late... 36 1.2
UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis... 36 1.2
UniRef50_A2WRG7 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic v... 35 2.0
UniRef50_A7NVU4 Cluster: Chromosome chr18 scaffold_1, whole geno... 35 2.0
UniRef50_Q6MQ78 Cluster: Putative uncharacterized protein precur... 34 2.7
UniRef50_Q13JX3 Cluster: Putative spermidine synthase; n=2; Burk... 34 2.7
UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep: ... 34 3.5
UniRef50_Q9M9B8 Cluster: F27J15.5; n=4; core eudicotyledons|Rep:... 33 4.7
UniRef50_Q9H4Q3 Cluster: PR domain zinc finger protein 13; n=13;... 33 4.7
UniRef50_Q7QJS8 Cluster: ENSANGP00000020719; n=1; Anopheles gamb... 33 6.2
UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1; ... 33 6.2
UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4; ... 33 6.2
UniRef50_Q91NQ3 Cluster: Polymerase P2; n=2; Prune dwarf virus|R... 33 8.2
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 267 bits (655), Expect = 1e-70
Identities = 124/137 (90%), Positives = 124/137 (90%)
Frame = +1
Query: 256 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 435
VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPR
Sbjct: 1567 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRALLAKL 1626
Query: 436 XXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLG 615
DDRTLPDKIASYLSEFVVGH GDAFWTLLPADQVIYQSALFDFFCRECSKEQKL
Sbjct: 1627 VLALDDRTLPDKIASYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLA 1686
Query: 616 LKIGEVPEHLCQTMLSL 666
LKIGEVPEHLCQTMLSL
Sbjct: 1687 LKIGEVPEHLCQTMLSL 1703
Score = 173 bits (422), Expect = 2e-42
Identities = 80/81 (98%), Positives = 80/81 (98%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
YSAFDQSQH EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD
Sbjct: 1485 YSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 1544
Query: 191 DNTDYNIAVIYSEYDITTQTV 253
DNTDYNIAVIYSEYDITTQTV
Sbjct: 1545 DNTDYNIAVIYSEYDITTQTV 1565
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 155 bits (377), Expect = 7e-37
Identities = 72/125 (57%), Positives = 82/125 (65%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
L+SGDD +SPPPP P W + +LSL FK E R GLFCGYYLGPAGA+R+P
Sbjct: 161 LISGDDLDISPPPPVRPTWPILEAMLSLRFKTEVSRYGLFCGYYLGPAGAVRSPLALFAK 220
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
DD ++ DK ASYLSEF VGH G WTLLP +QV YQSA FDFFCR C KL
Sbjct: 221 LIIAVDDGSIEDKKASYLSEFAVGHSLGQDMWTLLPENQVPYQSANFDFFCRNCPPSWKL 280
Query: 613 GLKIG 627
L+IG
Sbjct: 281 ALRIG 285
Score = 111 bits (266), Expect = 2e-23
Identities = 50/74 (67%), Positives = 62/74 (83%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+A+DQSQ EAVVLER KM R+SIP LIDLH ++KTN+ +Q GPLT MRLTGEPGTYD
Sbjct: 78 YTAYDQSQGGEAVVLERLKMLRVSIPQPLIDLHVHLKTNVDTQLGPLTSMRLTGEPGTYD 137
Query: 191 DNTDYNIAVIYSEY 232
DN+DYN+AV +++
Sbjct: 138 DNSDYNLAVTAAKF 151
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 154 bits (374), Expect = 2e-36
Identities = 71/137 (51%), Positives = 92/137 (67%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
+VSGDDS++ P +W A+ LL+L FK E ++ LFCGYY+GPAGAIR+P
Sbjct: 1592 MVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPAGAIRSPITLFAK 1651
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
DD ++ DK+ASYLSEF +GH G FW LLP DQV YQSA++DFFCR S+EQK
Sbjct: 1652 IMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYDFFCRHASREQKQ 1711
Query: 613 GLKIGEVPEHLCQTMLS 663
L IGEVP+ + ++ S
Sbjct: 1712 ILNIGEVPDTVLSSIAS 1728
Score = 130 bits (313), Expect = 4e-29
Identities = 57/82 (69%), Positives = 67/82 (81%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH EAVV E KM RLSIP LI+LH Y+K N+ +QFGPLTCMRLTGEPGTYD
Sbjct: 1511 YTAFDQSQHGEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYD 1570
Query: 191 DNTDYNIAVIYSEYDITTQTVL 256
DNTDYN+AVIYS+Y + ++
Sbjct: 1571 DNTDYNLAVIYSKYLVLDHPIM 1592
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 153 bits (371), Expect = 4e-36
Identities = 70/134 (52%), Positives = 90/134 (67%)
Frame = +1
Query: 238 HHANCLVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPR 417
H LVSGDDSLV PP +P W A++PL +L K E GLFCGY++GPAGA+RAPR
Sbjct: 1765 HRTPVLVSGDDSLVDRVPPMNPSWPALAPLFALKPKPETSPFGLFCGYFVGPAGAVRAPR 1824
Query: 418 XXXXXXXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECS 597
+D +LP+KIASY++EF VG GD+ W+L+P + VIYQSA FD CR S
Sbjct: 1825 ALFAKLAIALEDGSLPEKIASYVAEFSVGQSLGDSLWSLIPPELVIYQSACFDLICRHAS 1884
Query: 598 KEQKLGLKIGEVPE 639
+ KL L++GEVP+
Sbjct: 1885 PQLKLALRLGEVPD 1898
Score = 123 bits (297), Expect = 3e-27
Identities = 55/82 (67%), Positives = 65/82 (79%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH EAVVLE KM R SIP I LH ++KTNI QFGPLTCMR+TGEPGTYD
Sbjct: 1689 YTAFDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLTCMRITGEPGTYD 1748
Query: 191 DNTDYNIAVIYSEYDITTQTVL 256
DNTDYN+A++Y++Y + VL
Sbjct: 1749 DNTDYNLAILYTQYLLHRTPVL 1770
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 151 bits (367), Expect = 1e-35
Identities = 67/131 (51%), Positives = 87/131 (66%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
+VSGDDSL+ PP W A++P+L+LTFKKE R FCGYY+G GA+R+P
Sbjct: 1595 MVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKERGRYATFCGYYVGFTGAVRSPPALFAK 1654
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
DD ++ DK+ +YL+EF VGH GDAFWT+LP + V YQSA FDFFCR + K+
Sbjct: 1655 LMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAKV 1714
Query: 613 GLKIGEVPEHL 645
L++GE PE L
Sbjct: 1715 MLRLGEAPESL 1725
Score = 134 bits (325), Expect = 1e-30
Identities = 58/76 (76%), Positives = 68/76 (89%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH EAVV ER KM RLSIP+ L+DLH Y+KTN+++QFGPLTCMRLTGEPGTYD
Sbjct: 1514 YTAFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTGEPGTYD 1573
Query: 191 DNTDYNIAVIYSEYDI 238
DNTDYNIAV++ EY +
Sbjct: 1574 DNTDYNIAVLHLEYAV 1589
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 151 bits (365), Expect = 2e-35
Identities = 70/138 (50%), Positives = 88/138 (63%)
Frame = +1
Query: 250 CLVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 429
C+VSGDDSL+ PP +P W AV PLL+L FKKE R G FCGYY+G G IR+P
Sbjct: 1667 CMVSGDDSLLGREPPRNPIWQAVKPLLALRFKKERTRYGEFCGYYVGCEGCIRSPMALFA 1726
Query: 430 XXXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQK 609
DD T+ +K+ SY +EF +GH GDAFW LLP D V +QSA+FDFFCR ++ K
Sbjct: 1727 KLMVCVDDGTIEEKMISYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPEDVK 1786
Query: 610 LGLKIGEVPEHLCQTMLS 663
+ K+G V L +LS
Sbjct: 1787 VMFKLGRVEVSLFSHLLS 1804
Score = 138 bits (335), Expect = 8e-32
Identities = 59/74 (79%), Positives = 70/74 (94%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y++FDQSQH EAVV ERKKMERL+IPSHLIDLH ++KTN+++QFGPLTCMRLTGEPGTYD
Sbjct: 1587 YTSFDQSQHGEAVVFERKKMERLNIPSHLIDLHIHLKTNVSTQFGPLTCMRLTGEPGTYD 1646
Query: 191 DNTDYNIAVIYSEY 232
DNTDYN+AV++ EY
Sbjct: 1647 DNTDYNLAVLHLEY 1660
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 143 bits (347), Expect = 3e-33
Identities = 66/142 (46%), Positives = 85/142 (59%)
Frame = +1
Query: 241 HANCLVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRX 420
H +VSGDDSL+ PP P+W A+ PLL+L FKKE FCGYY G +R+P
Sbjct: 1632 HVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIA 1691
Query: 421 XXXXXXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSK 600
DD ++ DK+A+YL EF VGH GD+ W+ LP V +QSA FDFFCR +
Sbjct: 1692 LFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPR 1751
Query: 601 EQKLGLKIGEVPEHLCQTMLSL 666
+ KL L +GEVPE + Q + L
Sbjct: 1752 DLKLALHLGEVPETIIQRLSHL 1773
Score = 135 bits (326), Expect = 1e-30
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH EAVVLERKKMERLSIP HLI LH ++KT++ +QFGPLTCMRLTGEPGTYD
Sbjct: 1555 YTAFDQSQHGEAVVLERKKMERLSIPDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYD 1614
Query: 191 DNTDYNIAVIYSEY 232
DNTDYN+AVI EY
Sbjct: 1615 DNTDYNLAVINLEY 1628
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 141 bits (341), Expect = 2e-32
Identities = 65/131 (49%), Positives = 80/131 (61%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
+VSGDDSL+ PP P+W + PLLSL FKKE R FCGYY G +R+P
Sbjct: 1774 MVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHVGCVRSPVALFAK 1833
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
DD ++ DK+ASYLSEF +GH GD W LP + V +QSA FDFFCR + KL
Sbjct: 1834 LAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPRHLKL 1893
Query: 613 GLKIGEVPEHL 645
L +GEVPE +
Sbjct: 1894 SLMLGEVPESI 1904
Score = 133 bits (322), Expect = 3e-30
Identities = 62/84 (73%), Positives = 73/84 (86%), Gaps = 1/84 (1%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH EAVVLERKKMERLSIP LIDLH ++KT++++QFGPLTCMRLTGEPGTYD
Sbjct: 1693 YTAFDQSQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYD 1752
Query: 191 DNTDYNIAVIYSEY-DITTQTVLS 259
DN+DYN+AVI EY T T++S
Sbjct: 1753 DNSDYNLAVINCEYMAANTPTMVS 1776
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 138 bits (335), Expect = 8e-32
Identities = 59/76 (77%), Positives = 71/76 (93%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH E+VVLE KM+RL+IPSHLI LH ++KTN+++QFGPLTCMRLTGEPGTYD
Sbjct: 1579 YTAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYD 1638
Query: 191 DNTDYNIAVIYSEYDI 238
DNTDYN+AVIYS+YD+
Sbjct: 1639 DNTDYNLAVIYSQYDV 1654
Score = 129 bits (311), Expect = 7e-29
Identities = 59/120 (49%), Positives = 71/120 (59%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
+VSGDDSL+ P P DW +V L L FK E + LFCGYY+GPAG IR P
Sbjct: 1660 MVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHPLFCGYYVGPAGCIRNPLALFCK 1719
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
DD L D+ SYL+EF GH G++ W LLP V YQSA FDFFCR C + +K+
Sbjct: 1720 LMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQYQSACFDFFCRRCPRHEKM 1779
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 134 bits (324), Expect = 2e-30
Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Frame = +1
Query: 250 CLVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 429
CLVSGDDS+V+ PP +P W+A+ LL L FK LFCGYY+ P GA+R P
Sbjct: 1557 CLVSGDDSVVAGQPPVNPAWNAIKNLLHLKFKTHCSAYPLFCGYYVSPVGAVRNPHALFA 1616
Query: 430 XXXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQK 609
DD ++P+K SYLSEF VGH G FW+ +P YQ+A+++FFCR CS+ +K
Sbjct: 1617 KLMIAHDDGSIPEKKLSYLSEFSVGHSIGHEFWSAIPDSIHCYQAAVYNFFCRHCSRSEK 1676
Query: 610 LGLKIGEVPE-HL 645
L L + + E HL
Sbjct: 1677 LLLTLDSIDESHL 1689
Score = 130 bits (313), Expect = 4e-29
Identities = 56/76 (73%), Positives = 67/76 (88%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y++FDQSQH EAVVLE KM+RL IP LI+LH ++KTN+ +QFGPLTCMRLTGEPGTYD
Sbjct: 1477 YTSFDQSQHGEAVVLEVLKMQRLQIPKELIELHVHLKTNVDTQFGPLTCMRLTGEPGTYD 1536
Query: 191 DNTDYNIAVIYSEYDI 238
DNTDYN+AVIYS+Y +
Sbjct: 1537 DNTDYNLAVIYSQYSM 1552
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 134 bits (323), Expect = 2e-30
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y++FDQSQH EAV+ E KM R+ IP HLIDLH Y+KTN+++QFGPLTCMRLTGEPGTYD
Sbjct: 1504 YTSFDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNVSTQFGPLTCMRLTGEPGTYD 1563
Query: 191 DNTDYNIAVIYSEYDITTQTVL 256
DNTDYN+AVI+S+Y I+ ++
Sbjct: 1564 DNTDYNLAVIFSQYVISDHPIM 1585
Score = 110 bits (264), Expect = 3e-23
Identities = 55/128 (42%), Positives = 69/128 (53%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
+VSGDDS++ PP +P+W AV LL L FK E LFCGYY+GP G R P
Sbjct: 1585 MVSGDDSVICGHPPINPNWPAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNPFALFAK 1644
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
D L + + SYL EF +GH GD L P + Y SA +D FCR+C+ QKL
Sbjct: 1645 LMISYDKGNLFETLPSYLYEFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRKCTASQKL 1704
Query: 613 GLKIGEVP 636
L +P
Sbjct: 1705 ILSFEPIP 1712
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 133 bits (321), Expect = 4e-30
Identities = 56/76 (73%), Positives = 70/76 (92%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH E+V+LE KM+RLSIPSHLI LH ++KTN+ +QFGPLTCMRLTGEPGTYD
Sbjct: 1608 YTAFDQSQHGESVILEALKMKRLSIPSHLIQLHVHLKTNVATQFGPLTCMRLTGEPGTYD 1667
Query: 191 DNTDYNIAVIYSEYDI 238
DN+DYN+AVI+S++D+
Sbjct: 1668 DNSDYNLAVIHSQFDM 1683
Score = 127 bits (307), Expect = 2e-28
Identities = 63/137 (45%), Positives = 76/137 (55%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
+VSGDDSL+ PP W+A LL L FK E + LFCGYY G AGAIR P
Sbjct: 1689 MVSGDDSLIDRQPPLAQSWEATKRLLHLRFKTEKTTHPLFCGYYTGSAGAIRNPLALFSK 1748
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
DD + D+ SYL+EF GH GDA WTLLP IYQSA FD+FCR +K
Sbjct: 1749 LMIAIDDEAIHDRRLSYLTEFSTGHQLGDALWTLLPESTQIYQSACFDYFCRHSPPHEKA 1808
Query: 613 GLKIGEVPEHLCQTMLS 663
L E+P+ + + S
Sbjct: 1809 LLSSFELPDSVISKISS 1825
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 127 bits (306), Expect = 3e-28
Identities = 58/84 (69%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH EAVV E KM RLSIP +LI LH ++KTN+ +QFGPLTCMRLTGEPGTYD
Sbjct: 1481 YTAFDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNVETQFGPLTCMRLTGEPGTYD 1540
Query: 191 DNTDYNIAVIYSEYDI-TTQTVLS 259
DNTDYN+AV+ +YD+ T T++S
Sbjct: 1541 DNTDYNLAVLNLQYDLRKTPTLVS 1564
Score = 126 bits (303), Expect = 6e-28
Identities = 61/129 (47%), Positives = 79/129 (61%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
LVSGDDS +S +W V LL L K + +GLFCGYYLGP G IR P
Sbjct: 1562 LVSGDDSYLSGTLSPRSNWPFVKELLHLRLKPSSLIDGLFCGYYLGPQGCIRNPLALFAK 1621
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
DD + DK+ SYL+EF +GH GD+ W LLP+D V+YQSA FD+FCR+ ++ QK+
Sbjct: 1622 LMIAEDDGSAFDKLPSYLTEFSIGHGLGDSLWQLLPSDLVLYQSACFDYFCRKATRSQKI 1681
Query: 613 GLKIGEVPE 639
L+ G V +
Sbjct: 1682 LLQPGLVDQ 1690
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 126 bits (305), Expect = 4e-28
Identities = 56/82 (68%), Positives = 67/82 (81%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQH EAVVLE KM RLSIP LI LH ++K ++ +QFGPLTCMRLTGEPGTYD
Sbjct: 1574 YTAFDQSQHGEAVVLECLKMRRLSIPDSLIQLHSHLKCSVDTQFGPLTCMRLTGEPGTYD 1633
Query: 191 DNTDYNIAVIYSEYDITTQTVL 256
DN+DYN+AVIYS+Y + +L
Sbjct: 1634 DNSDYNLAVIYSQYSLNGHPIL 1655
Score = 120 bits (290), Expect = 2e-26
Identities = 57/129 (44%), Positives = 76/129 (58%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 432
L+SGDDS++ PP P W + +L L FK E + LFCGYY+ P GA R P
Sbjct: 1655 LISGDDSVLCGTPPPSPLWPTLKKMLHLRFKIERTSHPLFCGYYVSPHGAARNPYALFAK 1714
Query: 433 XXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKL 612
DD++L DK SYLSEF GH GD ++LP+ + YQSA+ DFFCR C+ +K+
Sbjct: 1715 LMICVDDKSLHDKKLSYLSEFSTGHLAGDLVTSILPSHLLPYQSAVHDFFCRNCTPAEKI 1774
Query: 613 GLKIGEVPE 639
L + +PE
Sbjct: 1775 LLSLDPIPE 1783
>UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physalis
mottle virus|Rep: RNA replicase polyprotein - Physalis
mottle virus (PhMV) (Belladonna mottle virus-Iowa)
Length = 178
Score = 120 bits (289), Expect = 3e-26
Identities = 57/117 (48%), Positives = 67/117 (57%)
Frame = +1
Query: 289 PPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPD 468
PP P+W A+ LL L FK E + LFCGYYL PAG IR P DD +LP+
Sbjct: 6 PPISPNWPAIKDLLHLKFKTEITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDDMSLPE 65
Query: 469 KIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLGLKIGEVPE 639
K+ SYLSE +GH GD LP + YQSA FDFFCR C+ QKL L +PE
Sbjct: 66 KVLSYLSEVSIGHNLGDQIIQHLPPHLIQYQSACFDFFCRNCTPSQKLLLSNDPIPE 122
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+A+D SQ V E M RL P +I+ + +K +ITS FGPL MR +GE TY
Sbjct: 1675 YTAYDASQDATFVNFETLLMRRLDFPLDIIEAYVEMKASITSHFGPLAIMRFSGEVWTYL 1734
Query: 191 DNTDYNIAVIYSEYDI 238
NT NIA Y++Y++
Sbjct: 1735 FNTLGNIAFTYAKYEV 1750
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 64.1 bits (149), Expect = 3e-09
Identities = 34/80 (42%), Positives = 46/80 (57%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQ + E K + IP +I + IKTN G L+ MRLTGE T+D
Sbjct: 1243 YTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAHIFLGTLSIMRLTGEGPTFD 1302
Query: 191 DNTDYNIAVIYSEYDITTQT 250
NT+ NIA ++++DI T
Sbjct: 1303 ANTECNIAYTHTKFDIPAGT 1322
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 62.9 bits (146), Expect = 7e-09
Identities = 33/80 (41%), Positives = 46/80 (57%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K SIP ++D + IKTN G L MRLTGE T+D
Sbjct: 1331 FTAFDQSQDGAMLQFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFD 1390
Query: 191 DNTDYNIAVIYSEYDITTQT 250
NT+ NIA +++++I T
Sbjct: 1391 ANTECNIAFTHTKFNIPEGT 1410
Score = 35.1 bits (77), Expect = 1.5
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPR 417
L +GDDS + P P + + L+L K + FCG+ + P G I+ P+
Sbjct: 1413 LYAGDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPK 1472
Query: 418 XXXXXXXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIY 558
+ + + SY + + + D+ LL +++ Y
Sbjct: 1473 KLHASWMLEKKKGNVKNVLRSYELDLALAYQHKDSLHELLSEEELKY 1519
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 59.3 bits (137), Expect = 8e-08
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E K ME L IP LI + YIKT++ S+ G MR +GE T
Sbjct: 1760 SDYEAFDASQDQYIMAFELKVMEYLGIPKDLIADYVYIKTHLGSKLGNFAIMRYSGEAST 1819
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + YD+
Sbjct: 1820 FLFNTMANMLFTFLRYDV 1837
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 58.4 bits (135), Expect = 1e-07
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + + E M R+++P ID + ++K N+ S+ G + MR TGE T
Sbjct: 1548 SDYEAFDASQDSQILAFEVAIMRRMNMPQEFIDDYVWLKCNLRSKLGNMAIMRFTGEAAT 1607
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT NI YD+
Sbjct: 1608 FLFNTMANIVFTIMAYDL 1625
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 58.4 bits (135), Expect = 1e-07
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y+ +DQSQ + E +K +P ++D + +IKT+ + G L MRL+GE T
Sbjct: 1261 SDYTQYDQSQDAAFLNFELRKARHFGVPEEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPT 1320
Query: 185 YDDNTDYNIA 214
+D NT+ NIA
Sbjct: 1321 FDANTECNIA 1330
Score = 34.3 bits (75), Expect = 2.7
Identities = 21/98 (21%), Positives = 37/98 (37%)
Frame = +1
Query: 259 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 438
+GDD + P W PL SL K FCG+ L G +++P
Sbjct: 1347 AGDDLVRDKACDERPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQ 1406
Query: 439 XXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQV 552
+ + SY +++ + GD + + D++
Sbjct: 1407 LALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDEL 1444
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 57.6 bits (133), Expect = 3e-07
Identities = 40/129 (31%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Frame = +1
Query: 259 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 438
SGDD + P P W ++S SL K FCG+ L G IR P
Sbjct: 1414 SGDDMFILCVPTISPGWLSISRYFSLVGKPVITFLPEFCGWLLTSHGIIRHPYLLYAKYL 1473
Query: 439 XXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLGL 618
++ TL + + SY EF GDA W LP D + YQ L F + S+ +
Sbjct: 1474 FHKENGTLANVLISYYMEFQHSLTLGDALWESLPYDLLPYQGQLQLLFNQARSRVPSFLI 1533
Query: 619 ---KIGEVP 636
K+G+ P
Sbjct: 1534 RENKLGDAP 1542
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/74 (36%), Positives = 39/74 (52%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+A+D+S E + E M +IP +I+LH + +TS G L MR +G+ TY
Sbjct: 1330 YTAYDKSCRGETLAFEICIMRLFNIPEWIIELHVELTLCVTSALGKLGIMRTSGQWCTYL 1389
Query: 191 DNTDYNIAVIYSEY 232
NT YN A +Y
Sbjct: 1390 FNTWYNDAYFTLKY 1403
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 57.6 bits (133), Expect = 3e-07
Identities = 31/80 (38%), Positives = 46/80 (57%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + +IP+ +I+ + YIK N G L MRL+GE T+D
Sbjct: 1379 FTAFDQSQDGAMLQFEVIKAKFFNIPAEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTFD 1438
Query: 191 DNTDYNIAVIYSEYDITTQT 250
NT+ +IA + + IT T
Sbjct: 1439 ANTECSIAYNATRFHITDDT 1458
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 56.4 bits (130), Expect = 6e-07
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E M+ L +P+ LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1779 SDYEAFDASQDQYIMAFELAVMKHLRLPADLIEDYKYIKTHLGSKLGSFAIMRFSGEAST 1838
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + YD+
Sbjct: 1839 FLFNTMANMLFTFMRYDM 1856
Score = 33.5 bits (73), Expect = 4.7
Identities = 21/87 (24%), Positives = 32/87 (36%)
Frame = +1
Query: 259 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 438
+GDD S + D L L K +F FCG+ L P G + P+
Sbjct: 1865 AGDDMCASKHLRVQSEHDKFLDKLKLKAKVQFTEKPTFCGWNLCPDGIYKKPQLVLERMC 1924
Query: 439 XXXDDRTLPDKIASYLSEFVVGHFFGD 519
+ L + I +Y E + G+
Sbjct: 1925 IARETNNLANCIDNYAIEVAFAYKMGE 1951
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 56.4 bits (130), Expect = 6e-07
Identities = 29/78 (37%), Positives = 44/78 (56%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E ME L +P LI+ + YIKT++ S+ G + MR +GE T
Sbjct: 1876 SDYEAFDASQDAYILAFEICLMEHLCLPRDLIEDYKYIKTHLGSKLGNFSIMRFSGEAST 1935
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + +YD+
Sbjct: 1936 FLFNTIANMLFTFLKYDL 1953
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 56.4 bits (130), Expect = 6e-07
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ V E ME L +P LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1792 SDYEAFDASQDQYIVGFELAVMEYLGLPRDLINDYIYIKTHLGSKLGSFAIMRFSGEAST 1851
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + Y+I
Sbjct: 1852 FLFNTMANMLFTFLRYEI 1869
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 55.6 bits (128), Expect = 1e-06
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E M+ L +P+ LI+ + YIK ++ S+ G MR TGE T
Sbjct: 1721 SDYEAFDASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEAST 1780
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + YDI
Sbjct: 1781 FLFNTMANMLFTFLVYDI 1798
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/80 (37%), Positives = 45/80 (56%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + +IP+ +I+ + YIK N G L MRL+GE T+D
Sbjct: 1339 FTAFDQSQDGAMLQFEVMKAKFFNIPADIIEGYIYIKLNAVIFLGTLGIMRLSGEGPTFD 1398
Query: 191 DNTDYNIAVIYSEYDITTQT 250
NT+ +IA + + I T
Sbjct: 1399 ANTECSIAYNATRFHIEDDT 1418
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y+ +DQSQ + E +K L +P ++ + +IKT+ + G L MRL+GE T
Sbjct: 1336 SDYTQYDQSQDAPFLNFELRKARHLGVPDEVLSFYKFIKTHAKTFVGNLAIMRLSGEGPT 1395
Query: 185 YDDNTDYNIA 214
+D NT+ NIA
Sbjct: 1396 FDANTECNIA 1405
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 55.6 bits (128), Expect = 1e-06
Identities = 29/76 (38%), Positives = 47/76 (61%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + +IP +I+ + IKT+ G L+ MRL+GE T+D
Sbjct: 1078 FTAFDQSQDGSILQFEVIKAKFHNIPEDVIEGYIQIKTHAKIFLGTLSIMRLSGEGPTFD 1137
Query: 191 DNTDYNIAVIYSEYDI 238
NT+ NIA +++++I
Sbjct: 1138 ANTEANIAYTHTKFNI 1153
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + ++P +I+ + IK + G L+ MRLTGE T+D
Sbjct: 1171 FTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFD 1230
Query: 191 DNTDYNIAVIYSEYDITTQT 250
NT+ NIA ++ +DI T
Sbjct: 1231 ANTECNIAYTHTRFDIPEGT 1250
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 55.2 bits (127), Expect = 1e-06
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + +P+ +I+ + +IK N G L MRL+GE T+D
Sbjct: 1298 FTAFDQSQDGAMLQFEVIKAKHYGVPADIIEGYLHIKMNAKIFLGTLAIMRLSGEGPTFD 1357
Query: 191 DNTDYNIAVIYSEYDITTQT 250
NT+ +IA ++ + + + T
Sbjct: 1358 ANTECSIAYHHTRFHVPSNT 1377
>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
Phlox virus S
Length = 1990
Score = 55.2 bits (127), Expect = 1e-06
Identities = 29/78 (37%), Positives = 43/78 (55%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ V E ME L +P LI+ + +IKT++ S+ G MR +GE T
Sbjct: 1776 SDYEAFDASQDQYMVAFEVAVMEYLGLPRDLIEDYKFIKTHLGSKLGNFAIMRFSGEAST 1835
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + +Y+I
Sbjct: 1836 FLFNTMANMLFTFLKYEI 1853
>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
symptomless virus|Rep: RNA-dependent RNA polymerase -
Narcissus symptomless virus
Length = 1871
Score = 55.2 bits (127), Expect = 1e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E M+ L +P L++ + +IKT++ S+ G MR +GE T
Sbjct: 1660 SDYEAFDASQDHYIMAFEVAVMKYLGLPRDLVNDYIFIKTHLGSKLGSFAIMRFSGEAST 1719
Query: 185 YDDNTDYNIAVIYSEYDIT 241
+ NT N+ + +Y+IT
Sbjct: 1720 FLFNTMSNMLFTFMKYEIT 1738
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E ME L +P LI+ + YIKT++ + G L MR +GE T
Sbjct: 1710 SDYEAFDASQDQYIMAFEIALMEFLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEAST 1769
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + YD+
Sbjct: 1770 FLFNTLANMLFTFLRYDL 1787
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/78 (37%), Positives = 40/78 (51%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ V E M L +P L+ + YIKT++ S+ G MR +GE T
Sbjct: 1757 SDYEAFDASQDQYIVAFEVAVMNYLGLPRDLVRDYLYIKTHLGSKLGNFAIMRFSGEAST 1816
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + YDI
Sbjct: 1817 FLFNTMANMLFTFLRYDI 1834
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 54.4 bits (125), Expect = 2e-06
Identities = 29/80 (36%), Positives = 42/80 (52%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
+ A+DQSQ + E K +P+ LI+ + +K N G L MRLTGE T+D
Sbjct: 1143 FEAYDQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFD 1202
Query: 191 DNTDYNIAVIYSEYDITTQT 250
NT+ NIA ++ + I T
Sbjct: 1203 ANTECNIAYTHARFHIPRGT 1222
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 54.0 bits (124), Expect = 3e-06
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E + M+ L +P LI + +IKT++ S+ G MR TGE T
Sbjct: 1968 SDYEAFDASQDHFILAFELEVMKFLGLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEAST 2027
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + YD+
Sbjct: 2028 FLFNTMANMLFTFLRYDL 2045
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 54.0 bits (124), Expect = 3e-06
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + +IPS +I+ + +KTN G L MRL+GE T+D
Sbjct: 1111 FTAFDQSQDGAMLQFEVIKAKFHNIPSDIINSYVELKTNAKVFLGVLKIMRLSGEGPTFD 1170
Query: 191 DNTDYNIAVIYSEY 232
NT+ +IA +++Y
Sbjct: 1171 ANTECSIAYHHTKY 1184
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 54.0 bits (124), Expect = 3e-06
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E + M+ L +PS LI+ + +IKT++ S+ G MR +GE T
Sbjct: 1754 SDYEAFDASQDEFIMAFELELMKYLRLPSDLIEDYKFIKTSLGSKLGNFAIMRFSGEAST 1813
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + Y+I
Sbjct: 1814 FLFNTLANMLFTFMRYNI 1831
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++A+DQSQ + E K IP +++ + +K N G L MRLTGE T+D
Sbjct: 1109 FTAYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTGEGPTFD 1168
Query: 191 DNTDYNIAVIYSEYDI 238
NT+ NIA ++ ++I
Sbjct: 1169 ANTECNIAYTHARFEI 1184
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 53.6 bits (123), Expect = 4e-06
Identities = 30/76 (39%), Positives = 43/76 (56%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + +IP +I + IKTN G L MRLTGE T+D
Sbjct: 1280 FTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFD 1339
Query: 191 DNTDYNIAVIYSEYDI 238
NT+ NIA + +++
Sbjct: 1340 ANTECNIAYTHLRFNV 1355
>UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20;
Carlavirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Potato virus S (strain Peruvian)
Length = 353
Score = 53.6 bits (123), Expect = 4e-06
Identities = 28/78 (35%), Positives = 41/78 (52%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ V E M L +P+ LI+ + YIKT++ S+ G MR +GE T
Sbjct: 142 SDYEAFDASQDQYIVAFELALMRYLGLPNDLIEDYKYIKTHLGSKLGNFAIMRFSGEAST 201
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + Y +
Sbjct: 202 FLFNTMANMLFTFLRYKL 219
>UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)
[Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
Helicase (EC 3.6.1.-)]; n=17; Chrysanthemum virus B|Rep:
RNA replication protein (ORF 1 protein) [Includes:
RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC
3.6.1.-)] - Chrysanthemum virus B (CVB)
Length = 260
Score = 53.6 bits (123), Expect = 4e-06
Identities = 28/78 (35%), Positives = 41/78 (52%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ V E ME L +P LI+ + +IK ++ S+ G MR +GE T
Sbjct: 45 SDYEAFDASQDQYIVAFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRFSGEAST 104
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + Y+I
Sbjct: 105 FLFNTMANMLFTFLRYNI 122
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 53.2 bits (122), Expect = 5e-06
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E M L++P LI+ + ++K N S+ G MR TGE GT
Sbjct: 1816 SDYEAFDSSQDANILAFEVSLMNYLNLPRDLIEDYKHLKFNTHSKLGRFAVMRFTGEAGT 1875
Query: 185 YDDNTDYNIAVIYSEYD 235
+ NT N+ + Y+
Sbjct: 1876 FLFNTLANMVFTFMRYE 1892
>UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6;
Potexvirus|Rep: Replication-associated protein -
Schlumbergera virus X
Length = 377
Score = 53.2 bits (122), Expect = 5e-06
Identities = 32/80 (40%), Positives = 42/80 (52%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQ + E K SIP ID + +K + G L MRLTGE T+D
Sbjct: 168 YTAFDQSQDGAMLQFEILKARHHSIPDVYIDGYVELKCCSKTFLGVLKIMRLTGEGPTFD 227
Query: 191 DNTDYNIAVIYSEYDITTQT 250
NT+ NIA +++ I T
Sbjct: 228 ANTECNIAFAHTKLKIPIGT 247
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 53.2 bits (122), Expect = 5e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + +IP+ +I+ + IK N G L+ MRL+GE T+D
Sbjct: 1222 FTAFDQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFD 1281
Query: 191 DNTDYNIAVIYSEYDI 238
NT+ +IA + Y +
Sbjct: 1282 ANTECSIAYTATRYHL 1297
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 53.2 bits (122), Expect = 5e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E + M L +P LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1752 SDYEAFDASQDEYIMAFELELMNFLGLPHDLIEDYKYIKTSLGSKLGNFAIMRFSGEAST 1811
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + Y++
Sbjct: 1812 FLFNTLANMLFTFLRYEV 1829
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 52.8 bits (121), Expect = 7e-06
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 17 AFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQF--GPLTCMRLTGEPGTYD 190
AFD SQ V ER E L +P LID Y+ T I S G ++ MRL+GE TYD
Sbjct: 1378 AFDASQDGAFVEFERLHAEFLGVPRELIDF--YVDTKIKSYIWRGTISVMRLSGEGPTYD 1435
Query: 191 DNTDYNIAVIYSEYDI 238
NT N+A + ++Y I
Sbjct: 1436 FNTWANMAFMATKYSI 1451
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 52.8 bits (121), Expect = 7e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y+ +DQSQ + E +K L +P ++ + +IKT+ + G L MRL+ E T
Sbjct: 1418 SDYTQYDQSQDAAFLNFEIRKARHLGVPEDVLSFYKFIKTHAKTFLGNLAIMRLSAEGPT 1477
Query: 185 YDDNTDYNIA 214
+D NT+ NIA
Sbjct: 1478 FDANTECNIA 1487
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD SQ + E + M+ L +P LI + +IK ++ S+ G + MR TGE T
Sbjct: 1949 SDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEAST 2008
Query: 185 YDDNTDYNIAVIYSEYDIT 241
+ NT N+ + Y++T
Sbjct: 2009 FLFNTMANMLFTFLRYELT 2027
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 50.4 bits (115), Expect = 4e-05
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K + ++P +I+ + IK G L MRLTGE T+D
Sbjct: 1147 FTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFD 1206
Query: 191 DNTDYNIAVIYSEYDI 238
NT+ NIA ++ + I
Sbjct: 1207 ANTECNIAYTHTRFHI 1222
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 50.4 bits (115), Expect = 4e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
Y+AFDQSQ + E K IP I+ + +K + + G L MRLTGE T+D
Sbjct: 1346 YTAFDQSQDGAMLQFEVLKARHHCIPEEFIEGYIDLKCSSKTFLGILKIMRLTGEGPTFD 1405
Query: 191 DNTDYNIAVIYS 226
NT+ NIA ++
Sbjct: 1406 ANTECNIAFAHT 1417
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 49.6 bits (113), Expect = 7e-05
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
++AFDQSQ + E K +IP +I+ + IK G L+ MRL+GE T+D
Sbjct: 1172 FTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSGEGPTFD 1231
Query: 191 DNTDYNIAVIYSEYDI 238
NT+ +IA + Y I
Sbjct: 1232 ANTECSIAYNATRYHI 1247
>UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep:
Replicase - Potato virus T
Length = 248
Score = 49.2 bits (112), Expect = 9e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD+SQ + LE + ++ LID + +K + + G + MR TGE GT
Sbjct: 9 SDYEAFDRSQDAIILGLEIECLKLFGWDQDLIDDYRKLKLWMGCRLGAIAIMRFTGEFGT 68
Query: 185 YDDNTDYNIAVIYSEYDITTQTVLS 259
+ NT NIA Y+IT TV++
Sbjct: 69 FFFNTIANIAFTCLRYNITRDTVIA 93
Score = 39.9 bits (89), Expect = 0.054
Identities = 21/90 (23%), Positives = 36/90 (40%)
Frame = +1
Query: 259 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 438
+GDD S D + + L+L K +F +FCG+Y+ G ++ PR
Sbjct: 95 AGDDMYASGKLEIRKDREDLLAHLTLKAKVQFTEKPMFCGWYIKKMGIVKEPRLVLERWL 154
Query: 439 XXXDDRTLPDKIASYLSEFVVGHFFGDAFW 528
+ + +Y E G+ G+ W
Sbjct: 155 IAERKKVIDQCFINYSIEVSYGYRLGEYLW 184
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYD 190
+ AFDQSQ + E K + SIP +I + ++K + G + MRL+GE T+D
Sbjct: 1444 FEAFDQSQDANMLQFELIKAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMRLSGEGPTFD 1503
Query: 191 DNTDYNIAVIYSEY 232
NT+ +IA ++ Y
Sbjct: 1504 ANTECSIAYNHTRY 1517
Score = 41.5 bits (93), Expect = 0.018
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Frame = +1
Query: 253 LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPR 417
L +GDDS + P P + +SP LSL K + FCG+ + P G I+ P
Sbjct: 1526 LYAGDDSACAAPLSEKPSFQHISPELSLKSKAKIRSQTKGDYATFCGWLITPKGFIKNPT 1585
Query: 418 XXXXXXXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSAL 570
++ L D +Y + + + D + LL +++ + L
Sbjct: 1586 QLYASWLLAKHNKDLQDVARNYALDLRIAYQLKDELYELLSPEELDHHQLL 1636
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/86 (26%), Positives = 43/86 (50%)
Frame = +1
Query: 331 SLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHF 510
SLT +E + +FCG+YL P G I++P+ + + L + + +YL E + +
Sbjct: 1476 SLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYR 1535
Query: 511 FGDAFWTLLPADQVIYQSALFDFFCR 588
G+ +T+L + Y + FF +
Sbjct: 1536 LGERLYTILKEEDFEYHYLVIRFFVK 1561
Score = 35.9 bits (79), Expect = 0.88
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y+AFD SQ + E ++ L + + +K + + G L MR TGE T
Sbjct: 1363 SDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCT 1422
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ +Y I
Sbjct: 1423 FLFNTFANMLFTQLKYKI 1440
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y+ +D+SQ + E +K +P ++D + IKT+ L MRL+GE T
Sbjct: 1148 SDYTQYDKSQDGLFLNFELRKARHFGVPQAVLDAYTAIKTDAKVFADTLKIMRLSGEGPT 1207
Query: 185 YDDNTDYNIAVIYSEYDIT 241
+D NT+ NIA + + ++
Sbjct: 1208 FDANTECNIAYDAARFQLS 1226
Score = 38.3 bits (85), Expect = 0.16
Identities = 24/103 (23%), Positives = 39/103 (37%)
Frame = +1
Query: 259 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 438
+GDD P W +S +L K R FCG+ L G ++ P+
Sbjct: 1233 AGDDLARDRNCPERASWKYISHQFTLQAKPLVTRKPDFCGWSLTKHGIVKNPKQLWQSMQ 1292
Query: 439 XXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSA 567
L D + SY +F + GD + + +++ Y A
Sbjct: 1293 LGLKLDKLKDIVPSYSLDFHHAYALGDKVYDIFTEEEMAYHQA 1335
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y A+D SQ + E K + L+ + LI+ + Y+K ++ + G L +R TGE T
Sbjct: 1422 SDYKAYDASQDSCTLAFEYKLLRYLAFSNSLIEDYLYLKMHLNCKLGNLAIIRFTGEFCT 1481
Query: 185 YDDNTDYNIAVIYSEYDI 238
+ NT N+ + +YD+
Sbjct: 1482 FLFNTLTNMLFTFMKYDV 1499
Score = 43.6 bits (98), Expect = 0.004
Identities = 29/120 (24%), Positives = 51/120 (42%)
Frame = +1
Query: 229 VRHHHANCLVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIR 408
VR HA C +GDD + P + ++ ++ SL K +F R+ FCG+ L G ++
Sbjct: 1499 VRKTHAICF-AGDDMCANVRLPENHEYSSLLKKFSLKAKVDFTRSPTFCGWNLSRYGIVK 1557
Query: 409 APRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCR 588
P + + SY E + + GD + +L ++ + L FF +
Sbjct: 1558 KPELIAARLAVARQKGEVNLVLDSYFLEHLYAYNKGDHLFEILSEKELEHHYNLTRFFVK 1617
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD+SQ + + E + ++ P LI+ + +K + G L MR +GE GT
Sbjct: 264 SDYEAFDRSQDEKILSFEVEVLKFFLWPEELINEYVTLKLMMGCSMGDLAIMRFSGEFGT 323
Query: 185 YDDNTDYNIAVIYSEYDITTQT 250
+ NT N+ Y IT T
Sbjct: 324 FFFNTICNMVFTCMRYCITKDT 345
Score = 33.5 bits (73), Expect = 4.7
Identities = 22/87 (25%), Positives = 35/87 (40%)
Frame = +1
Query: 259 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 438
+GDD D++ V L L K + + LFCG+ + P G ++ P
Sbjct: 350 AGDDMYAPGVLQVKSDYEHVLKELQLKAKVQVSTSPLFCGWRMTPYGIVKDPNLLLDRWK 409
Query: 439 XXXDDRTLPDKIASYLSEFVVGHFFGD 519
D L + +Y E V G+ G+
Sbjct: 410 MAKRDGKLDLCMINYALEAVYGYRLGE 436
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 39.9 bits (89), Expect = 0.054
Identities = 26/87 (29%), Positives = 38/87 (43%)
Frame = +1
Query: 328 LSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGH 507
LSL K + +FCG+ L G I+ P ++ L D I SY EF +
Sbjct: 1748 LSLKAKVNRTKVPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1807
Query: 508 FFGDAFWTLLPADQVIYQSALFDFFCR 588
G+ ++ L +Q+ Y L FF R
Sbjct: 1808 KLGERLYSHLEIEQLNYHQVLTRFFIR 1834
Score = 37.9 bits (84), Expect = 0.22
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y+AFD SQ + E + ++ ++ + +K + + G MR TGE T
Sbjct: 1639 SDYTAFDVSQDHTILAFEVELLKHFGWDDKVLQSYIKMKCTLGCRLGGFAIMRFTGEFST 1698
Query: 185 YDDNTDYNIAVIYSEYDITTQT 250
+ NT N+ + Y++ T
Sbjct: 1699 FLFNTLANMVFTFCRYEVPDGT 1720
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 39.1 bits (87), Expect = 0.094
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +2
Query: 5 TSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 184
+ Y AFD+SQ + + LE + + P LI + +K + G L MR +GE GT
Sbjct: 1474 SDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGDLAVMRFSGEFGT 1533
Query: 185 YDDNTDYNIAVIYSEYDITTQT 250
+ NT N+ Y + T
Sbjct: 1534 FFFNTICNMVFSCMRYHMDRNT 1555
>UniRef50_Q6QLN1 Cluster: Non-structural polyprotein; n=40; root|Rep:
Non-structural polyprotein - Avian hepatitis E virus
Length = 1531
Score = 37.9 bits (84), Expect = 0.22
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTN---ITSQFGPLTCMRL-TGEP 178
+S FD +Q+ ++ LE + M R +P ++ L+ +++ + + C + +GEP
Sbjct: 1302 FSEFDSTQNNVSLDLECELMRRFGMPDWMVALYHLVRSYWLLVAPKEALRGCWKKHSGEP 1361
Query: 179 GTYDDNTDYNIAVIYSEYDITTQTVL 256
GT NT +N+ V++ Y+ +VL
Sbjct: 1362 GTLLWNTVWNMTVLHHVYEFDRPSVL 1387
>UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root|Rep:
Non-structural polyprotein - Hepatitis E virus (strain
Myanmar) (HEV)
Length = 1693
Score = 37.1 bits (82), Expect = 0.38
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMR-----LTGE 175
+S FD +Q+ ++ LE ME +P LI L+ I++ Q P +R +GE
Sbjct: 1461 FSEFDSTQNNFSLGLECAIMEECGMPQWLIRLYHLIRSAWILQ-APKESLRGFWKKHSGE 1519
Query: 176 PGTYDDNTDYNIAVIYSEYD 235
PGT NT +N+AVI YD
Sbjct: 1520 PGTLLWNTVWNMAVITHCYD 1539
>UniRef50_Q5VI74 Cluster: RNA-dependent RNA polymerase; n=1;
Fragaria chiloensis latent virus|Rep: RNA-dependent RNA
polymerase - Fragaria chiloensis latent virus
Length = 786
Score = 36.7 bits (81), Expect = 0.50
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLID--LHCYIKTNITSQFG---PLTCMRLTGE 175
+S FD+SQ +++K RL +P D +++++I+ G + R TG+
Sbjct: 540 FSKFDKSQQELHHEVQKKIFLRLGLPRDFCDTWFTSHVRSHISDPSGLRFSVNFQRRTGD 599
Query: 176 PGTYDDNTDYNIAVIYSEYDITTQTVLSQV 265
TY NT +AV+ YD++ VL V
Sbjct: 600 AVTYLGNTVVTLAVLSYVYDLSDPNVLMVV 629
>UniRef50_Q6JE41 Cluster: P2 protein; n=1; Humulus japonicus latent
virus|Rep: P2 protein - Humulus japonicus latent virus
Length = 853
Score = 35.5 bits (78), Expect = 1.2
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDL------HCYIKTNITSQFGPLTCMRLTG 172
+S FD+SQ L+R+ R+ +P + ID +I F + R TG
Sbjct: 590 FSKFDKSQGELHHYLQREIFIRIGVPMNFIDAWVPQVTRSFISDPSNGLFFNVDFQRRTG 649
Query: 173 EPGTYDDNTDYNIAVIYSEYDITTQTVLSQV 265
+ TY NT + V+ YD+ VLS V
Sbjct: 650 DACTYLGNTLVTLCVLCHVYDLGDANVLSVV 680
>UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis E
virus|Rep: Nonstructural protein - Hepatitis E virus
Length = 1717
Score = 35.5 bits (78), Expect = 1.2
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMR-----LTGE 175
+S FD +Q+ ++ LE ME +P LI L+ +++ T Q P ++ +GE
Sbjct: 1485 FSEFDSTQNNFSLGLECVIMEECGMPQWLIRLYHLVRSAWTLQ-APKESLKGFWKKHSGE 1543
Query: 176 PGTYDDNTDYNIAVIYSEYD 235
PGT NT +N+A+I Y+
Sbjct: 1544 PGTLLWNTVWNMAIIAHCYE 1563
>UniRef50_A2WRG7 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 713
Score = 35.1 bits (77), Expect = 1.5
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = -3
Query: 289 VEVILKNHHLRQDSLRGDVVLAVNDGNIVIRVVVISAGLAGKAHAGQRSKLTCNVGFDVA 110
V V+L + RQ R D+V V++V ++ AG HAGQR L V FDVA
Sbjct: 444 VLVMLLGNLPRQALQRHDLVAGFQHAPAVMQVQLVLAGSGFGHHAGQRQALQPRVPFDVA 503
Query: 109 ME 104
+
Sbjct: 504 QQ 505
>UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic
virus|Rep: 27 kDa protein - White ash mosaic virus
Length = 243
Score = 34.7 bits (76), Expect = 2.0
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 119 KTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT 241
K N + G L MRLTGE T+D NT+ NIA + +T
Sbjct: 34 KCNARTFAGKLAIMRLTGEGPTFDANTECNIAYDALRFKLT 74
Score = 33.5 bits (73), Expect = 4.7
Identities = 21/98 (21%), Positives = 34/98 (34%)
Frame = +1
Query: 259 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 438
+GDD W ++P LT K FCG+ + G ++ PR
Sbjct: 82 AGDDLAREECAEERSSWAYLNPSFKLTAKPIETTRPDFCGWRITKEGIVKQPRQLYQSLV 141
Query: 439 XXXDDRTLPDKIASYLSEFVVGHFFGDAFWTLLPADQV 552
+ I SY +F + GD + + D +
Sbjct: 142 LGFLRGNIASMIPSYKIDFTYAYKMGDKLFEIFDEDDL 179
>UniRef50_A7NVU4 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=9; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 512
Score = 34.7 bits (76), Expect = 2.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 83 IPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSE 229
IPS +D+ +I+ + ++GPL C L G P + D+N + E
Sbjct: 87 IPSKSLDVSSFIRKRM-KKYGPLFCTNLVGRPVVVSSDPDFNYYIFQQE 134
>UniRef50_Q6MQ78 Cluster: Putative uncharacterized protein
precursor; n=1; Bdellovibrio bacteriovorus|Rep: Putative
uncharacterized protein precursor - Bdellovibrio
bacteriovorus
Length = 316
Score = 34.3 bits (75), Expect = 2.7
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -3
Query: 334 EKGVEKRRPNRGEQEVEV-ILKNHHLRQDSLRGDVVLAVNDGNIVIRVVVISAGLAGKAH 158
EK + + NRG E+ +++ + G VL+ N+ IR V+ S + +
Sbjct: 68 EKELFEASVNRGSAEIFANLMRRGSFKSVFSNGSFVLSQKKMNLDIRAVLTSHLFSELLN 127
Query: 157 AGQRSKLTCNVGFDVAMEVYKMRW 86
G+R +TC+ +V +V+ +RW
Sbjct: 128 TGERKSMTCS---EVLTQVFFLRW 148
>UniRef50_Q13JX3 Cluster: Putative spermidine synthase; n=2;
Burkholderia xenovorans LB400|Rep: Putative spermidine
synthase - Burkholderia xenovorans (strain LB400)
Length = 277
Score = 34.3 bits (75), Expect = 2.7
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 151 DLHAPYRRARHL*RQHGLQYCRHLQRVRHHHANCLVSGDDSLVSP 285
DLHA RA+ L GL CRH++R+ HH+ +SG S P
Sbjct: 230 DLHA---RAKALTTSLGLDLCRHVKRMEHHYREESLSGYPSSGEP 271
>UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep:
T7N9.5 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1436
Score = 33.9 bits (74), Expect = 3.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 23 DQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP 148
D+S V E K + +PSHL D HCY T T++ P
Sbjct: 883 DESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSP 924
>UniRef50_Q9M9B8 Cluster: F27J15.5; n=4; core eudicotyledons|Rep:
F27J15.5 - Arabidopsis thaliana (Mouse-ear cress)
Length = 392
Score = 33.5 bits (73), Expect = 4.7
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = -3
Query: 334 EKGVEKRRPNRGEQEVEVILKNHHLRQDSLRGDVVLAVNDGNIVIRVVVISAGLAGKAHA 155
E+ + KR + +E+I NH + +D ++++ + ++V+++ S LA K H
Sbjct: 100 EEDIAKRFMKQIGAGLEIIHDNHIIHRDLKPENILIDGSGDDLVLKIADFS--LARKLHP 157
Query: 154 GQRSKLTCNVGFDVAMEVYK-MRWNGK 77
G+ + C F +A EV + R+N K
Sbjct: 158 GKYLETVCGSPFYMAPEVLQFQRYNEK 184
>UniRef50_Q9H4Q3 Cluster: PR domain zinc finger protein 13; n=13;
Eumetazoa|Rep: PR domain zinc finger protein 13 - Homo
sapiens (Human)
Length = 717
Score = 33.5 bits (73), Expect = 4.7
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 199 GLQYCRHLQRVRHHHANCLVSGDDSLVSPPPPAHPDWDAVS--PLLSL 336
G + H HHH CL++GD PPPP P A+ PLLS+
Sbjct: 359 GAGHHHHHHAHHHHHPKCLLAGDPP--PPPPPGLPCSGALRGFPLLSV 404
>UniRef50_Q7QJS8 Cluster: ENSANGP00000020719; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000020719 - Anopheles gambiae
str. PEST
Length = 1606
Score = 33.1 bits (72), Expect = 6.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 214 RHLQRVRHHHANCLVSGDDSLVSPPPPAHPDWDAVS 321
R + VRH H + +++ D L+ PPPP P VS
Sbjct: 718 RKKETVRHFHFDSVIAKSDILIKPPPPPPPPPAVVS 753
>UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 548
Score = 33.1 bits (72), Expect = 6.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 98 IDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 196
+DLHC+IK + FGP+ + L G YD+N
Sbjct: 279 VDLHCFIKKFVN--FGPIESVYLINSNGIYDNN 309
>UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 824
Score = 33.1 bits (72), Expect = 6.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 265 DDSLVSPPPPAHPDWDAVSPLLSLTFK 345
D S++ PPPPA P +++P+++ TF+
Sbjct: 514 DASMMPPPPPAQPKGPSLNPIITTTFR 540
>UniRef50_Q91NQ3 Cluster: Polymerase P2; n=2; Prune dwarf virus|Rep:
Polymerase P2 - Prune dwarf virus
Length = 788
Score = 32.7 bits (71), Expect = 8.2
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = +2
Query: 11 YSAFDQSQHXEAVVLERKKMERLSIPSHLIDL----HCYIKTNITSQFG---PLTCMRLT 169
+S FD+SQ ++RK RL +P ++ HC +++I+ G + R
Sbjct: 511 FSKFDKSQQELHHEIQRKIFLRLGVPQEFVNTWFTSHC--RSHISDASGLRFSVNYQRRA 568
Query: 170 GEPGTYDDNTDYNIAVIYSEYDITTQTV 253
G+ TY NT +A + YD+ + V
Sbjct: 569 GDACTYLGNTIVTLAALCYVYDLRSSNV 596
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,561,548
Number of Sequences: 1657284
Number of extensions: 13030709
Number of successful extensions: 39860
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 38154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39797
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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