Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060369.seq
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   6.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 91   SSYRPPLLHQNQHYKSIWTFDLHAPY 168
            + Y  P+L QN  + ++ T+D H  +
Sbjct: 1571 AGYDVPVLAQNLDWVAVMTYDFHGQW 1596


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 211 CRHLQRVRHHHANCLVSGDDSLVSPPPPA 297
           CR   R RHH  +    G++     P PA
Sbjct: 252 CRGRFRRRHHLVHHKCGGEEEAERAPAPA 280


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed
          protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 2  GTSYSAFDQSQHXEAVVLERK 64
          GT+   + Q QH   VV++ K
Sbjct: 10 GTALPTYQQPQHISGVVVDPK 30


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription
          factor Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 2  GTSYSAFDQSQHXEAVVLERK 64
          GT+   + Q QH   VV++ K
Sbjct: 10 GTALPTYQQPQHISGVVVDPK 30


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 336 ERKEWRNGVPIGVSRRW 286
           + ++WRN  P   + RW
Sbjct: 360 DEQQWRNNQPSTSNNRW 376


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 2  GTSYSAFDQSQHXEAVVLERK 64
          GT+   + Q QH   VV++ K
Sbjct: 10 GTALPTYQQPQHISGVVVDPK 30


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
          transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 2  GTSYSAFDQSQHXEAVVLERK 64
          GT+   + Q QH   VV++ K
Sbjct: 10 GTALPTYQQPQHISGVVVDPK 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,259
Number of Sequences: 336
Number of extensions: 3104
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)