Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060369.seq
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    30   0.26 
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   4.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.4  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.4  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   7.4  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.8  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   9.8  

>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +1

Query: 169 RRARHL*RQHGLQYCRHLQRVRHHHANCLVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKK 348
           ++ + L +Q G++    ++R+    A+  V  D  L  P  P+  DW    P   +   K
Sbjct: 21  KKLKRLSKQGGVEGRLPMKRLFRQRAHANVLSDHELEYPRSPSEMDWSPYYPDFDVESNK 80

Query: 349 EFVRNGLFCGY 381
           +     + CGY
Sbjct: 81  KVEIVDIGCGY 91


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/67 (22%), Positives = 25/67 (37%)
 Frame = +2

Query: 53  LERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEY 232
           L R+    LS  + +      I+ +    +    C  +   P T DD+ +Y       EY
Sbjct: 382 LARRVSSPLSALNQMSQSPIPIRVSSDKDYDSYACHEVVSNPSTLDDDYNYMFVCPPEEY 441

Query: 233 DITTQTV 253
             +T  V
Sbjct: 442 TYSTDNV 448


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 256 VSGDDSLVSPPPPAHPDWDAVSPLLSL 336
           VS  +S+VSPPP   P   A +P  SL
Sbjct: 158 VSAPNSMVSPPPSFQPP-SAAAPATSL 183


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 257 TRQFAW*CRTRCK*RQYCNPCCRHK 183
           +RQFA  CR RC+  +YC+  C+H+
Sbjct: 492 SRQFAK-CR-RCRRTKYCSKECQHQ 514


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 513  EEVAYNKLTEVRRYFVRKGSVV 448
            EE  +NKLTEV  Y +  G++V
Sbjct: 1082 EERKWNKLTEVVDYVIHNGALV 1103


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 574 DFF-CRECSKEQKLGLKIGEVPEHLCQTML 660
           DFF  RE   +++LGL    VP HL Q+ L
Sbjct: 834 DFFGLRELGLDRELGLDSLSVPLHLLQSRL 863


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 511 FGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLGLKIGEVPEHLCQTML 660
           F    W L  +D VIY    F F C +        LK+ +  E+ C+ +L
Sbjct: 70  FSSLEW-LTKSDAVIYLEDQFHFHCYDYYYTPIPSLKLKDSEENTCEMIL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,533
Number of Sequences: 5004
Number of extensions: 52428
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)