Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060369.seq
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0580 - 30117806-30118519 25 1.1
05_07_0126 + 27869058-27869805,27869988-27870328,27870430-278705... 30 1.9
06_01_0087 + 695443-695655,696669-696983 29 2.5
09_06_0142 - 21107878-21109104 29 3.3
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 29 4.4
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928... 28 7.7
08_02_0934 + 22747742-22748644 28 7.7
08_02_0197 - 14150787-14151440 28 7.7
03_05_0111 - 20919291-20919439,20920128-20920237,20920341-209204... 28 7.7
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656... 28 7.7
>02_05_0580 - 30117806-30118519
Length = 237
Score = 25.0 bits (52), Expect(2) = 1.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 280 SPPPPAHPDWDAVSPLL 330
SPPPP HP DA++ L
Sbjct: 195 SPPPPQHPLADALASSL 211
Score = 24.2 bits (50), Expect(2) = 1.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 226 RVRHHHANCLVSGDDSLVSPPPPA 297
R++HH + LV ++ + PPPA
Sbjct: 157 RIKHHRLSGLVPAAETGATCPPPA 180
>05_07_0126 +
27869058-27869805,27869988-27870328,27870430-27870510,
27870978-27871073,27871152-27871307,27871575-27871721
Length = 522
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 235 HHHANCLVSGDDSLVSPPPPAHPDWDA 315
HH N S S PP P H W+A
Sbjct: 145 HHFVNSFASSSSSAYVPPNPLHRSWNA 171
>06_01_0087 + 695443-695655,696669-696983
Length = 175
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +1
Query: 265 DDSLVSPPPPAH---PDWDAVSPL 327
DD L PPPPA DW+A +PL
Sbjct: 26 DDELPPPPPPASGSGEDWEATTPL 49
>09_06_0142 - 21107878-21109104
Length = 408
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 116 IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 214
I + FG L C+ + GEPG Y T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3
Query: 118 DVAMEVYKMRWNGK 77
D+AMEVYK+ WNG+
Sbjct: 689 DIAMEVYKIVWNGQ 702
>10_08_0666 -
19691985-19692216,19692327-19692404,19692508-19692837,
19692913-19693158,19693224-19693483,19694469-19695023
Length = 566
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 616 GRVFVPWNIHGKRNQKARSGKSL 548
GR VPW++HGK +R+ +++
Sbjct: 253 GRCLVPWHLHGKHFPSSRTRRAV 275
>08_02_0934 + 22747742-22748644
Length = 300
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Frame = +1
Query: 115 HQNQHYKSIWTFDLHAPYRRARHL*RQHGLQY------CRHLQRVRHHHANCLVSGDDSL 276
HQN H + HA ++ A + HG Y HH + + +
Sbjct: 117 HQNAHKRERQRAK-HAQFQTAMAMHHGHGQYYPLPDPYAAAFAAYPGHHHHHRFAATAAA 175
Query: 277 VSPPPPAHPDWDAVS 321
PPPP +P W A S
Sbjct: 176 AMPPPPHYPSWAAGS 190
>08_02_0197 - 14150787-14151440
Length = 217
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 238 HHANCLVSGDDSLVSPPPPAHPDWDAVSPLL-SLTFKKEFV 357
HH C++ + PPPPA A PL+ +LT F+
Sbjct: 11 HHPCCMMLSKNPRTPPPPPAMHHHHAHKPLITALTSTSSFL 51
>03_05_0111 -
20919291-20919439,20920128-20920237,20920341-20920466,
20920545-20920632,20920933-20921053,20921159-20921231,
20921399-20921462,20921543-20921739,20921844-20921899,
20922050-20922146,20923731-20923870
Length = 406
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +1
Query: 484 LSEFVVGHFFGDAFWTLLPADQVIYQSAL----FDFFCRECSKEQKLGLK--IGEVP 636
L+ F +G F + WT+ ++I +SAL + +C+ + + K IGEVP
Sbjct: 35 LASFCIGLIFTNRMWTMPEPKEIIRRSALEVNKMNLLSGDCAPKSVMEQKDIIGEVP 91
>01_06_0772 -
31864564-31864653,31864733-31864816,31865547-31865603,
31865700-31865828,31866704-31866790,31866856-31866933,
31867150-31867306,31868000-31868141,31868835-31868986,
31869118-31869371,31869819-31869896
Length = 435
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +1
Query: 487 SEFVVGHFFGDAFWTLLPADQVIYQ---SALFDFF 582
S F V + F FW LLPA ++ + LF FF
Sbjct: 196 SSFTVANIFEGMFWFLLPASLIVINDIAAYLFGFF 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,007
Number of Sequences: 37544
Number of extensions: 385459
Number of successful extensions: 1407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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