Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060369.seq
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)               32   0.48 
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     31   1.1  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     30   1.9  
SB_47868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)                       29   4.5  
SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  

>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
          Length = 635

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 128 ITSQFGPLTCMRLTGEPGTYDDNTDYNIAV-IYSEYDITTQTVLSQ 262
           +   F P + +R+  EPG Y  ++ + +AV +YS  ++ + +VL++
Sbjct: 437 LEEHFPPSSGVRIIAEPGRYYSSSSFTLAVNVYSRREVQSSSVLAE 482


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 124 GFDVAMEVYKMRWNGKPLHFLPFQNNGLXMLRLV 23
           G + AME  K+ WN     F+P+++ G+ +L  V
Sbjct: 795 GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 828


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 178 RHL*RQHGLQYCRH--LQRVRHHHANCLVS 261
           RH+ RQH  Q+ RH   Q  RHHH + +V+
Sbjct: 90  RHIHRQHHHQHYRHHRHQHYRHHHHHLIVT 119


>SB_47868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 RVRHHHANCLVSGDDSLVSPPPPAHPDWDAVSPLLSL 336
           RV +      ++  D L SPPPP  P +D + PL +L
Sbjct: 2   RVTNSRPGLYINSRDELSSPPPPPEPMYD-LGPLAAL 37


>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
          Length = 853

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 463 PDKIASYLSEFVVGHFFGDAFWTLLPADQVIYQSALFDFFCRECSK 600
           P  +   L++  V H   D F T + +DQ  Y+  LFD  CR   K
Sbjct: 729 PKSLLDRLTDIYV-HLNTDEFATAVASDQRSYRKELFDDACRHLHK 773


>SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = -3

Query: 322 EKRRPNRGEQEVEVILKNHHLRQDSLRGDVVLAVNDGNIVIRVVVISAGLAGKAHAGQRS 143
           E +R  + EQ+     +  H R  + +  +V   ++    +RV +I AG+ G A A    
Sbjct: 219 ENKRVGQVEQQAT---RYQHERHSAFKKHLVCHADESKSPVRVAIIGAGIGGSASAFFTR 275

Query: 142 KLTCNVGFDVAMEVYK 95
           +L   +G    ++VY+
Sbjct: 276 EL---LGSSAEIDVYE 288


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 256  QDSLRGDVVLAVNDGNIVIRVVVISAGLAGKAHAGQ 149
            QDS  G+ VL +N  N V+     + GLA   H G+
Sbjct: 1193 QDSFEGEEVLKINAWNYVVATYSSNTGLARLWHDGK 1228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,526,159
Number of Sequences: 59808
Number of extensions: 426704
Number of successful extensions: 1257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)