Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060369.seq
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell l...    28   6.8  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    28   6.8  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.     28   6.8  

>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -3

Query: 106 EVYKMRWNGKP--LHFLPFQNNG 44
           EV+   WNG+P  +  LPF+NNG
Sbjct: 118 EVFSTVWNGRPVAIKVLPFENNG 140


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 170 GEPGTYDDNTDYNIAVIYSEYDITTQTVLSQVMIL*Y-HLHLLLTPIGT 313
           G+PGTY   ++ +++   S + I T  +L+   +L Y   HL + PI T
Sbjct: 33  GQPGTYSTYSNPDVSFGKSAWTIATVWILACFHLLFYFRAHLAIQPITT 81


>Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical
           protein M01G12.9 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 568 LFDFFCRECSKEQKLGLKIGEVPEHLCQTML 660
           + D++  + +K+ K+ +KIGE+P+ L +T L
Sbjct: 8   VIDYYHSKINKDSKMEIKIGELPKVLNKTYL 38


>U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform c protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 208 YCRHLQRVRHHHANC-LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKE 351
           + R ++ V   H  C L  GD  ++S PPP     + + P+++ TF+ E
Sbjct: 258 WTRKMELVVARHRICSLPIGDSDVISSPPPGIQS-NTLPPVMAKTFEDE 305


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 208 YCRHLQRVRHHHANC-LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKE 351
           + R ++ V   H  C L  GD  ++S PPP     + + P+++ TF+ E
Sbjct: 258 WTRKMELVVARHRICSLPIGDSDVISSPPPGIQS-NTLPPVMAKTFEDE 305


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 82  HSISSYRPPLLHQNQ---HYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHHAN 249
           H    Y PP +H +    H+  + T   H  +    H    HG  Y  H +   HHH +
Sbjct: 25  HGAPGYMPPTVHVHTDGGHHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYES-HHHHGH 82


>AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 208 YCRHLQRVRHHHANC-LVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKE 351
           + R ++ V   H  C L  GD  ++S PPP     + + P+++ TF+ E
Sbjct: 258 WTRKMELVVARHRICSLPIGDSDVISSPPPGIQS-NTLPPVMAKTFEDE 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,573
Number of Sequences: 27780
Number of extensions: 314428
Number of successful extensions: 969
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)