Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060369.seq
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 448 DDRTLPDKIASYLSEFVVGHFFGDAFWT 531
           D R     IA YL++   G F  D  WT
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLIWT 99


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 241 HANCLV---SGDDSLVSPPPPAHP 303
           H+N L    SG +  V+P PP HP
Sbjct: 79  HSNLLSTSPSGQNKAVAPYPPNHP 102


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 241 HANCLV---SGDDSLVSPPPPAHP 303
           H+N L    SG +  V+P PP HP
Sbjct: 79  HSNLLSTSPSGQNKAVAPYPPNHP 102


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 331 SLTFKKEFVRN-GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFV 498
           SL   +  +R  GL CG   G A  I A +              LPD I +YL++FV
Sbjct: 289 SLNAARMLIRQEGLLCGGSSG-AALIAALKIAKDIPEEKRMVIILPDGIRNYLTKFV 344


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +1

Query: 79  FHSISSYRPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 243
           + S + + PP  H +QH+ S      H     + H   QHG           HHH
Sbjct: 305 YPSTAGFLPPSYHPHQHHPS----QYHPHRGSSPH--HQHGNHTMGPTMGPPHHH 353


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 160 HAGQRSKLTCNV 125
           H G+R+ LTC+V
Sbjct: 623 HLGERTTLTCSV 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,225
Number of Sequences: 438
Number of extensions: 3872
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)