Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060369.seq
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49180.1 68414.m05514 protein kinase family protein contains ...    33   0.13 
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    31   0.91 
At3g20980.1 68416.m02653 hypothetical protein                          30   1.6  
At1g08470.1 68414.m00938 strictosidine synthase family protein s...    30   1.6  
At4g24950.1 68417.m03574 hypothetical protein                          29   2.8  
At1g66235.1 68414.m07518 expressed protein ; expression supporte...    29   2.8  
At5g59190.1 68418.m07418 subtilase family protein contains simil...    29   3.7  
At4g22340.2 68417.m03229 phosphatidate cytidylyltransferase, put...    29   3.7  
At4g22340.1 68417.m03230 phosphatidate cytidylyltransferase, put...    29   3.7  
At1g32500.1 68414.m04010 ATP-binding-cassette transporter, putat...    29   3.7  
At5g22020.1 68418.m02562 strictosidine synthase family protein s...    28   4.9  
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al...    28   4.9  
At4g03950.1 68417.m00558 glucose-6-phosphate/phosphate transloca...    27   8.5  
At1g62430.1 68414.m07043 phosphatidate cytidylyltransferase / CD...    27   8.5  

>At1g49180.1 68414.m05514 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 408

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = -3

Query: 334 EKGVEKRRPNRGEQEVEVILKNHHLRQDSLRGDVVLAVNDGNIVIRVVVISAGLAGKAHA 155
           E+ + KR   +    +E+I  NH + +D    ++++  +  ++V+++   S  LA K H 
Sbjct: 102 EEDIAKRFMKQIGAGLEIIHDNHIIHRDLKPENILIDGSGDDLVLKIADFS--LARKLHP 159

Query: 154 GQRSKLTCNVGFDVAMEVYK-MRWNGK 77
           G+  +  C   F +A EV +  R+N K
Sbjct: 160 GKYLETVCGSPFYMAPEVLQFQRYNEK 186


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 199 GLQYCRHLQRVRHHHANCLVS-GDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFC 375
           GL +   +  VR+   N ++   +  +   PPP HP  D + P +   F+K+ +RN    
Sbjct: 72  GLLFGFQIDNVRNQRENLVLHLANSQMRLQPPPRHP--DGLDPTVLRRFRKKLLRNYTNW 129

Query: 376 GYYLGPAGAIRAP 414
             +LG    + +P
Sbjct: 130 CSFLGVRCHVTSP 142


>At3g20980.1 68416.m02653 hypothetical protein
          Length = 405

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 241 GDVVLAVNDGNIVIRVVVISAGLAGKAHAGQRSKLTCNVGFDVAME 104
           GDV    N+GN  I+ V+   G+ G A +  + K     GF+V+ME
Sbjct: 316 GDVTFITNEGNKTIKNVLYVPGIEGNALSVSQLKRN---GFEVSME 358


>At1g08470.1 68414.m00938 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 390

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 24  TNLSXXRPLFWNGRKWSGFPFHLIL*TSIATSKPTL 131
           T ++  R LFWNG +W+ F +     + +   KP+L
Sbjct: 84  TGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSL 119


>At4g24950.1 68417.m03574 hypothetical protein
          Length = 157

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 579 EIKKRALVNHLICWQESPESVAEEVAYNKLTEVRRY 472
           + KK  L++H  CW  +  S ++     K T +RR+
Sbjct: 87  QTKKTTLLSHSSCWSSNVTSSSDTTKAKKKTTIRRF 122


>At1g66235.1 68414.m07518 expressed protein ; expression supported
           by MPSS
          Length = 265

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 49  CFGTEENGAAFHSISSYRPPLLHQNQHYKSIWTFD 153
           C     +GA+   I +    +L Q++H+KS W FD
Sbjct: 63  CENRRSSGASSDDIFNQAKEMLMQDKHFKSGWKFD 97


>At5g59190.1 68418.m07418 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 693

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 630 FSYFEAEFLFLGTFTAKEIKKRALVNHLICWQESPESVAEE-VAYN 496
           F + E +  F+ T + KE+K  + V+  + W +   SV    VAY+
Sbjct: 645 FGFLEEKKSFVVTISGKELKDGSFVSSSVVWSDGSHSVRSPIVAYS 690


>At4g22340.2 68417.m03229 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase (CDS) GI:2181182 from
           [Arabidopsis thaliana]
          Length = 365

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 487 SEFVVGHFFGDAFWTLLPADQVIYQSALFDFFC 585
           S F V + F   FW LLPA  ++    +F + C
Sbjct: 137 SSFTVANIFEGIFWFLLPASLIVIND-IFAYIC 168


>At4g22340.1 68417.m03230 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase (CDS) GI:2181182 from
           [Arabidopsis thaliana]
          Length = 423

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 487 SEFVVGHFFGDAFWTLLPADQVIYQSALFDFFC 585
           S F V + F   FW LLPA  ++    +F + C
Sbjct: 195 SSFTVANIFEGIFWFLLPASLIVIND-IFAYIC 226


>At1g32500.1 68414.m04010 ATP-binding-cassette transporter, putative
           similar to ATP-binding-cassette transporter (ABC1)
           described in PMID:11156608
          Length = 475

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 460 LPDKIASYLSEFVVGHFFGDAFWTL 534
           LPD++ + +SEF+     GD FW++
Sbjct: 157 LPDELTNRISEFIGNFDSGDLFWSI 181


>At5g22020.1 68418.m02562 strictosidine synthase family protein
           similar to SP|P15324 Strictosidine synthase precursor
           (EC 4.3.3.2) {Rauvolfia mannii}; contains Pfam profile
           PF03088: Strictosidine synthase
          Length = 395

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 24  TNLSXXRPLFWNGRKWSGFPFHLIL*TSIATSKPT 128
           T ++  R LFW+G KW  F +     + I   KP+
Sbjct: 90  TGVADGRVLFWDGEKWIDFAYTSSNRSEICDPKPS 124


>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
           alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
           [Arabidopsis thaliana]; contains Pfam profile PF01055:
           Glycosyl hydrolases family 31; identical to cDNA
           alpha-xylosidase precursor (XYL1) partial cds GI:4163996
          Length = 915

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 2   GTSYSAFDQSQHXEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPL 151
           G+ Y  FD +Q   AVV +  K   L  P + +++H Y  T + +Q G L
Sbjct: 716 GSWYHMFDMTQ---AVVSKNGKRVTLPAPLNFVNVHLYQNTILPTQQGGL 762


>At4g03950.1 68417.m00558 glucose-6-phosphate/phosphate
           translocator, putative similar to
           glucose-6-phosphate/phosphate-translocator precursor
           [Pisum sativum] gi|2997591|gb|AAC08525
          Length = 277

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 657 HCLTKMFGHFSYFEAEFLFLGTFTAKEIKKRALVNHLI 544
           H L     H +   A    LGTF   +IK R   NH++
Sbjct: 225 HHLPNPLKHVNALGAAIAILGTFIYSQIKNRVKKNHIL 262


>At1g62430.1 68414.m07043 phosphatidate cytidylyltransferase /
           CDP-diglyceride synthetase (CDS1) identical to SP|O04928
           Phosphatidate cytidylyltransferase (EC 2.7.7.41)
           (CDP-diglyceride synthetase) (CDP-diglyceride
           pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS)
           (CTP:phosphatidate cytidylyltransferase) (CDP-DAG
           synthase) (CDP-DG synthetase) {Arabidopsis thaliana}
          Length = 421

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 487 SEFVVGHFFGDAFWTLLPADQVIYQ---SALFDFF 582
           S F V + F   FW LLPA  +I     + +F FF
Sbjct: 195 SSFTVANIFEGIFWFLLPASLIIINDIFAYIFGFF 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,987
Number of Sequences: 28952
Number of extensions: 292839
Number of successful extensions: 955
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)