Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060367.seq
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             106   1e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           96   3e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 86   3e-17
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               34   0.12 
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.22 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.38 
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 31   0.67 
SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)               31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              30   2.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  28   8.2  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  106 bits (255), Expect = 1e-23
 Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
 Frame = +1

Query: 271 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 450
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 451 TREHALLAFTLGVKQLIVGETK--WIPLNHHTVSP 549
           TREHA+L  +LGV QLIV   K   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +2

Query: 56  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 202
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 40/81 (49%), Positives = 58/81 (71%)
 Frame = +1

Query: 262 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 441
           G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 442 NGQTREHALLAFTLGVKQLIV 504
            GQTREHA+LA T GVK L++
Sbjct: 267 GGQTREHAMLAKTAGVKHLVI 287



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +2

Query: 140 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 253
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + E
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEE 203



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 510 NKMDSTEPPYSEPRFEEIK-KEVSFIHSRRLGYNP 611
           NKMD     ++E R+EEIK K   F+  +++G+NP
Sbjct: 290 NKMDDPTVKWNEERYEEIKVKLTPFL--KKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)
 Frame = +1

Query: 232 IGQTKG*AELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 378
           + + K   E GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 12  LDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +2

Query: 200 MGKGSFKYAWVLDKLKAE 253
           MGKGSFKYAWVLDKLKAE
Sbjct: 1   MGKGSFKYAWVLDKLKAE 18


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 29/116 (25%), Positives = 45/116 (38%)
 Frame = +1

Query: 262 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 441
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA           
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177

Query: 442 NGQTREHALLAFTLGVKQLIVGETKWIPLNHHTVSPDLRKSRRKYPSYIQEDWATT 609
             QT+E    A   GV  +I    K   ++    +PD  K++    + + EDW  T
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINK---IDKPNANPDNIKTQLSTMNLLVEDWGGT 227


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 262 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
           GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 313 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 56  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 307 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 683 SILVEGSNMLSPCPSRNGHESDS-SWVVAQSS*MY 582
           S+ V+G   L PCP ++G E+ + +W+  Q+S  Y
Sbjct: 537 SVEVQGKTFLIPCPQQSGEEAKTIAWLAEQASLRY 571


>SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)
          Length = 636

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 676 WLKAPTCCLRAHPEMGTKATAAGL*PNLLECMKDTS 569
           +L  P   L  HPE+  KA  A L  N+L   KDTS
Sbjct: 482 FLTKPNTRLSQHPELLKKALTAALLKNILSSSKDTS 517


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 319 IIDAPGHRDFIKNMITGTSQADCAVLIV 402
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +1

Query: 322 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 501
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 502 VGETK 516
           + + K
Sbjct: 123 ILQNK 127


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 71  THINIVVIGHVDSGKSTTTGHLIY 142
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 80   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 178
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5   TSYLGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 142
           T+ LG   ++++R   +M +     + + V+G+VD+GKST  G L +
Sbjct: 207 TAELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,892,638
Number of Sequences: 59808
Number of extensions: 461132
Number of successful extensions: 1225
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)