Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060366.seq
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 128 3e-30
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 122 2e-28
08_02_0657 - 19749835-19751942,19753123-19753561 100 9e-22
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 30 1.5
06_01_0057 - 483710-484309 29 3.5
02_01_0462 + 3332464-3332470,3333606-3335806 29 3.5
07_03_0500 - 18798893-18799893,18801616-18801701,18801742-188018... 29 4.6
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 128 bits (310), Expect = 3e-30
Identities = 71/148 (47%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Frame = +1
Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420
L +G++RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHXFASWL 600
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ G S K I A +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGG---MRSVEFKVIETDPAEYC 181
Query: 601 LIP*YT---VNGXPIKREEEEEALNAVG 675
++ T +G PIKRE+EE L+ VG
Sbjct: 182 IVAPDTEIFCDGEPIKREDEER-LDEVG 208
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +2
Query: 80 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKG
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKG 68
Score = 64.5 bits (150), Expect = 8e-11
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +3
Query: 510 RDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCE 623
+ D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I C+
Sbjct: 155 KGDLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIFCD 192
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 122 bits (295), Expect = 2e-28
Identities = 65/145 (44%), Positives = 85/145 (58%)
Frame = +1
Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420
L +G++RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHXFASWL 600
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ G K + +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVA 184
Query: 601 LIP*YTVNGXPIKREEEEEALNAVG 675
+G PIKRE+EE L+ VG
Sbjct: 185 PDTEIFCDGEPIKREDEER-LDEVG 208
Score = 82.2 bits (194), Expect = 4e-16
Identities = 41/58 (70%), Positives = 45/58 (77%)
Frame = +2
Query: 80 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKG
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKG 68
Score = 64.5 bits (150), Expect = 8e-11
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +3
Query: 510 RDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCE 623
+ D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I C+
Sbjct: 155 KGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCD 192
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 100 bits (240), Expect = 9e-22
Identities = 40/87 (45%), Positives = 60/87 (68%)
Frame = +1
Query: 247 QGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPI 426
+G+RR+E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 70 RGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPF 129
Query: 427 DDSVEGLTGNLFEVYLKPYFMEAYRPI 507
DDSVEG++G+LFE YLKPYFM+A RP+
Sbjct: 130 DDSVEGISGDLFEPYLKPYFMDALRPV 156
Score = 54.8 bits (126), Expect = 6e-08
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 5/61 (8%)
Frame = +2
Query: 101 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGNAAR 265
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 266 K 268
+
Sbjct: 76 E 76
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 510 RDDTFMVRGGMRAVEFKVVETDP-SPFCIVAPDTVIHCE 623
+ D F+VRG M AVEFKV++T+P + IVA DT I C+
Sbjct: 158 KGDRFLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCD 196
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 416 YCQLMIQLRVLLAIYSKYT*-SRTSWRLTVRSS*RHLHGPRGHARRRVQSGRNRSITXLH 592
+C+ IQ+ A + ++ S L SS HLHG G RR + +GR R+I L
Sbjct: 1228 FCEKKIQIPPESACFIEFPDESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVLG 1287
Query: 593 RG 598
G
Sbjct: 1288 HG 1289
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 105 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 251
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 152 VEEAVSDDNSVVAL---SQAKMEQLQLFRGDTVLLKGNAARKPFASCSQTII 298
+EE V N +V S A+M+QL F D + G+ + F++C+Q +I
Sbjct: 252 LEELVLSSNRLVGSLPPSFARMQQLSFFAIDNNYINGSIPLEMFSNCTQLMI 303
>07_03_0500 -
18798893-18799893,18801616-18801701,18801742-18801805,
18802640-18802853
Length = 454
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 149 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGNAARKPFAS 280
++EEA+ DN +A S+ + + G TV+ N R+ FA+
Sbjct: 377 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFAA 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,346
Number of Sequences: 37544
Number of extensions: 395609
Number of successful extensions: 1035
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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