Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060366.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         90   2e-18
SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)                 28   8.1  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/52 (78%), Positives = 49/52 (94%)
 Frame = +2

Query: 98  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KG
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKG 56



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 32/36 (88%), Positives = 35/36 (97%)
 Frame = +3

Query: 516 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCE 623
           D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHCE
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCE 139



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = +1

Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 369
           L +G++RK+TVCIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 625 GXPIKREEEEEALNAVG 675
           G P+KREEEEE+LN VG
Sbjct: 140 GEPVKREEEEESLNEVG 156


>SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)
          Length = 512

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 442 GLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIH 579
           G+T N F +   PYFM   + +      W+   C     K   +IH
Sbjct: 241 GMTENFFILLENPYFMSVPKVLTKNVFGWAFSKCLYWDPKCQTRIH 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,708,956
Number of Sequences: 59808
Number of extensions: 448727
Number of successful extensions: 1134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)