BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060366.seq (688 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 150 5e-36 BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 148 2e-35 AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 148 2e-35 AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 148 2e-35 AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 148 2e-35 AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 141 2e-33 BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 54 4e-07 M61893-1|AAA52375.1| 610|Homo sapiens endothelial leukocyte adh... 31 5.1 M30640-1|AAA52377.1| 610|Homo sapiens endothelial leukocyte adh... 31 5.1 M24736-1|AAA52376.1| 610|Homo sapiens endothelial leukocyte adh... 31 5.1 BC142711-1|AAI42712.1| 610|Homo sapiens selectin E (endothelial... 31 5.1 BC142677-1|AAI42678.1| 610|Homo sapiens selectin E (endothelial... 31 5.1 BC131551-1|AAI31552.1| 610|Homo sapiens selectin E (endothelial... 31 5.1 AL021940-6|CAA17434.1| 610|Homo sapiens selectin E (endothelial... 31 5.1 AL021940-2|CAI19358.1| 547|Homo sapiens selectin E (endothelial... 31 5.1 AF540378-1|AAN01237.1| 610|Homo sapiens selectin E (endothelial... 31 5.1 >BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein protein. Length = 806 Score = 150 bits (363), Expect = 5e-36 Identities = 77/147 (52%), Positives = 94/147 (63%), Gaps = 2/147 (1%) Frame = +1 Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420 L +G++R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117 Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHXFASWL 600 PIDD+VEG+TGNLFEVYLKPYF+EAYRPI G K + H + Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVET--HPSPYCI 175 Query: 601 LIP*YTVN--GXPIKREEEEEALNAVG 675 + P ++ G PIKRE+EEE+LN VG Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVG 202 Score = 93.5 bits (222), Expect = 6e-19 Identities = 45/63 (71%), Positives = 57/63 (90%) Frame = +2 Query: 80 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGNA 259 AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKG Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63 Query: 260 ARK 268 R+ Sbjct: 64 RRE 66 >BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein protein. Length = 806 Score = 148 bits (359), Expect = 2e-35 Identities = 76/147 (51%), Positives = 94/147 (63%), Gaps = 2/147 (1%) Frame = +1 Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420 L +G++R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117 Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHXFASWL 600 PIDD+VEG+TGNLFEVYLKPYF+EAYRPI G K + + + Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYC--I 175 Query: 601 LIP*YTVN--GXPIKREEEEEALNAVG 675 + P ++ G PIKRE+EEE+LN VG Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVG 202 Score = 93.5 bits (222), Expect = 6e-19 Identities = 45/63 (71%), Positives = 57/63 (90%) Frame = +2 Query: 80 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGNA 259 AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKG Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63 Query: 260 ARK 268 R+ Sbjct: 64 RRE 66 Score = 77.8 bits (183), Expect = 3e-14 Identities = 33/38 (86%), Positives = 36/38 (94%) Frame = +3 Query: 510 RDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCE 623 + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHCE Sbjct: 148 KGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE 185 >AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein protein. Length = 806 Score = 148 bits (359), Expect = 2e-35 Identities = 76/147 (51%), Positives = 94/147 (63%), Gaps = 2/147 (1%) Frame = +1 Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420 L +G++R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117 Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHXFASWL 600 PIDD+VEG+TGNLFEVYLKPYF+EAYRPI G K + + + Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYC--I 175 Query: 601 LIP*YTVN--GXPIKREEEEEALNAVG 675 + P ++ G PIKRE+EEE+LN VG Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVG 202 Score = 93.5 bits (222), Expect = 6e-19 Identities = 45/63 (71%), Positives = 57/63 (90%) Frame = +2 Query: 80 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGNA 259 AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKG Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63 Query: 260 ARK 268 R+ Sbjct: 64 RRE 66 Score = 77.8 bits (183), Expect = 3e-14 Identities = 33/38 (86%), Positives = 36/38 (94%) Frame = +3 Query: 510 RDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCE 623 + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHCE Sbjct: 148 KGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE 185 >AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic reticulum ATPase protein. Length = 806 Score = 148 bits (359), Expect = 2e-35 Identities = 76/147 (51%), Positives = 94/147 (63%), Gaps = 2/147 (1%) Frame = +1 Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420 L +G++R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117 Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHXFASWL 600 PIDD+VEG+TGNLFEVYLKPYF+EAYRPI G K + + + Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYC--I 175 Query: 601 LIP*YTVN--GXPIKREEEEEALNAVG 675 + P ++ G PIKRE+EEE+LN VG Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVG 202 Score = 93.5 bits (222), Expect = 6e-19 Identities = 45/63 (71%), Positives = 57/63 (90%) Frame = +2 Query: 80 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGNA 259 AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKG Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63 Query: 260 ARK 268 R+ Sbjct: 64 RRE 66 Score = 77.8 bits (183), Expect = 3e-14 Identities = 33/38 (86%), Positives = 36/38 (94%) Frame = +3 Query: 510 RDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCE 623 + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHCE Sbjct: 148 KGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE 185 >AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. Length = 806 Score = 148 bits (359), Expect = 2e-35 Identities = 76/147 (51%), Positives = 94/147 (63%), Gaps = 2/147 (1%) Frame = +1 Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420 L +G++R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117 Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHXFASWL 600 PIDD+VEG+TGNLFEVYLKPYF+EAYRPI G K + + + Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYC--I 175 Query: 601 LIP*YTVN--GXPIKREEEEEALNAVG 675 + P ++ G PIKRE+EEE+LN VG Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVG 202 Score = 93.5 bits (222), Expect = 6e-19 Identities = 45/63 (71%), Positives = 57/63 (90%) Frame = +2 Query: 80 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGNA 259 AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKG Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63 Query: 260 ARK 268 R+ Sbjct: 64 RRE 66 Score = 77.8 bits (183), Expect = 3e-14 Identities = 33/38 (86%), Positives = 36/38 (94%) Frame = +3 Query: 510 RDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCE 623 + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHCE Sbjct: 148 KGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE 185 >AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein protein. Length = 307 Score = 141 bits (341), Expect = 2e-33 Identities = 73/140 (52%), Positives = 88/140 (62%), Gaps = 2/140 (1%) Frame = +1 Query: 262 KETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 441 +E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VE Sbjct: 3 REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE 62 Query: 442 GLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHXFASWLLIP*YTV 621 G+TGNLFEVYLKPYF+EAYRPI G K + + ++ P + Sbjct: 63 GITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYC--IVAPDTVI 120 Query: 622 N--GXPIKREEEEEALNAVG 675 + G PIKRE+EEE+LN VG Sbjct: 121 HCEGEPIKREDEEESLNEVG 140 Score = 77.8 bits (183), Expect = 3e-14 Identities = 33/38 (86%), Positives = 36/38 (94%) Frame = +3 Query: 510 RDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCE 623 + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHCE Sbjct: 86 KGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE 123 >BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. Length = 644 Score = 54.4 bits (125), Expect = 4e-07 Identities = 22/23 (95%), Positives = 23/23 (100%) Frame = +3 Query: 555 FKVVETDPSPFCIVAPDTVIHCE 623 FKVVETDPSP+CIVAPDTVIHCE Sbjct: 1 FKVVETDPSPYCIVAPDTVIHCE 23 Score = 31.5 bits (68), Expect = 2.9 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = +1 Query: 625 GXPIKREEEEEALNAVG 675 G PIKRE+EEE+LN VG Sbjct: 24 GEPIKREDEEESLNEVG 40 >M61893-1|AAA52375.1| 610|Homo sapiens endothelial leukocyte adhesion molecule 1 protein. Length = 610 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 >M30640-1|AAA52377.1| 610|Homo sapiens endothelial leukocyte adhesion molecule 1 protein. Length = 610 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 >M24736-1|AAA52376.1| 610|Homo sapiens endothelial leukocyte adhesion molecule 1 protein. Length = 610 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 >BC142711-1|AAI42712.1| 610|Homo sapiens selectin E (endothelial adhesion molecule 1) protein. Length = 610 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 >BC142677-1|AAI42678.1| 610|Homo sapiens selectin E (endothelial adhesion molecule 1) protein. Length = 610 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 >BC131551-1|AAI31552.1| 610|Homo sapiens selectin E (endothelial adhesion molecule 1) protein. Length = 610 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 >AL021940-6|CAA17434.1| 610|Homo sapiens selectin E (endothelial adhesion molecule 1) protein. Length = 610 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 >AL021940-2|CAI19358.1| 547|Homo sapiens selectin E (endothelial adhesion molecule 1) protein. Length = 547 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 >AF540378-1|AAN01237.1| 610|Homo sapiens selectin E (endothelial adhesion molecule 1) protein. Length = 610 Score = 30.7 bits (66), Expect = 5.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -1 Query: 463 RIDCQ*DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLR 284 +++C Q Q+ VC +L + ER + + G F S EFS + + L+ Sbjct: 346 QVECTTQGQWTQQIPVCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLK 405 Query: 283 ARCKRFPCGVALEQD 239 KR CG E D Sbjct: 406 G-SKRLQCGPTGEWD 419 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 99,008,975 Number of Sequences: 237096 Number of extensions: 2050308 Number of successful extensions: 3965 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3963 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 7839245960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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