Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060366.seq
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   8.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -1

Query: 238 CVTTEELKLLHFGL*KCHD*VVIADCFFDNETVGSVLATEDR 113
           CV+ E L +    L  CH  VV   C  +       L TEDR
Sbjct: 301 CVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTEDR 342


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 93 LLLSAILFKIYC*NLRTIIIFIT 25
          +LLS+  F++    L TI+IF+T
Sbjct: 1  MLLSSAWFEVIAAVLLTILIFVT 23


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -1

Query: 580 DGSVSTTLNSTARM-PPRTMKVSSRG 506
           +G   TTLN+T    PP     S RG
Sbjct: 298 NGPTQTTLNATTLFCPPNLRLTSERG 323


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -1

Query: 580 DGSVSTTLNSTARM-PPRTMKVSSRG 506
           +G   TTLN+T    PP     S RG
Sbjct: 388 NGPTQTTLNATTLFCPPNLRLTSERG 413


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/31 (16%), Positives = 16/31 (51%)
 Frame = +1

Query: 505 ILVTTPSWSAGACAPSSSKWSKQIHHXFASW 597
           ++   P W+ G    ++ + ++++H    +W
Sbjct: 160 VVAYEPVWAIGTGKTATPQQAQEVHEKLRNW 190


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 512  TRIGR*ASMKYGFKYTSNRLPVR 444
            TR+G   S K   +  +NR+P R
Sbjct: 1293 TRVGEGQSSKVAAQVPTNRVPAR 1315


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 512  TRIGR*ASMKYGFKYTSNRLPVR 444
            TR+G   S K   +  +NR+P R
Sbjct: 1289 TRVGEGQSSKVAAQVPTNRVPAR 1311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,707
Number of Sequences: 438
Number of extensions: 4168
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)