Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060365.seq
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   4.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   4.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   8.3  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   8.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.3  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 164 TCDEPPSHFEY*SDEIIIQ*XYFC 93
           TCDE   H  Y  D+   +  Y C
Sbjct: 914 TCDEEEGHISYHPDKADCRMYYMC 937


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 206 QATPGPWWSSLCMASDQSVQRISLNT 283
           Q+TPG   S   + SD +  ++ LNT
Sbjct: 131 QSTPGIKLSINIILSDPNTNKLKLNT 156


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 199 QHPEITSASLGPHVTNP 149
           Q P+  S S  PHV NP
Sbjct: 271 QRPKSASLSPPPHVYNP 287


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 193 DAAIPSHSWSLVVEPLYGQRSERTTD 270
           DAA   H W   +E +YG      TD
Sbjct: 204 DAA--KHMWPADLEAIYGSLKNLNTD 227


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 193 DAAIPSHSWSLVVEPLYGQRSERTTD 270
           DAA   H W   +E +YG      TD
Sbjct: 204 DAA--KHMWPADLEAIYGSLKNLNTD 227


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = +1

Query: 241 YGQRSERTTDISKHHXPSSGVTNCLYQS 324
           YG    ++  ++ HH   S      Y+S
Sbjct: 11  YGSHHHQSGSVAGHHHEQSAAAAAAYRS 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,210
Number of Sequences: 336
Number of extensions: 2375
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)