Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060365.seq
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.52 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   2.1  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    26   2.8  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.5  

>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 193 DAAIPSHSWSLVVEPLYGQRSERTTDISKHHXP 291
           D  +P HS   V EP+  +  E+ TD SK   P
Sbjct: 328 DGTLPIHSTQTVEEPIDTKAGEKLTDSSKQPSP 360


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161 MWP*RST-RDFRMLLFQATPGPWWSSLCMASDQSVQRI 271
           MWP  ST  D+   +F   P   WS +  + D S+Q I
Sbjct: 238 MWPELSTFPDWNKFIFHEYPPKPWSEILPSVDTSIQYI 275


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 190 EITSASLGPHVTNPQVISNISQTKL 116
           EIT  SLGP+  N  V++++ QT L
Sbjct: 40  EITRTSLGPNGKNKIVVNHLQQTFL 64


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 442 AESLAPFLPRNXSXAESSHLGIL-TLNFDLSDSSNRN 335
           +++ A ++P N S   S HL +L   +F+L  S +R+
Sbjct: 239 SKTTATYIPHNPSKKSSQHLPLLPDASFELERSVSRS 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,783
Number of Sequences: 5004
Number of extensions: 37195
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)