Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060365.seq
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0039 + 455760-457631                                             29   1.6  
02_05_0204 - 26721498-26721545,26721731-26721823,26723822-267239...    29   1.6  
02_02_0329 + 9008948-9009089,9009454-9009638                           29   2.8  
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469...    28   4.9  
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634...    27   6.5  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    27   8.6  
04_03_0060 - 10511421-10512494                                         27   8.6  

>04_01_0039 + 455760-457631
          Length = 623

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = -2

Query: 397 ESSHLGILTLNFDLSDSSNRNGHTLT---GIDSW*LH---LKXHGV*RYPLYALIAGHTK 236
           E +H  +L+   DLS    R  HT+    G+D+   H   LK HG+  Y L    A    
Sbjct: 376 EDTHHRLLSKIQDLSSKQPRTAHTVNGGGGVDAMHSHAVELKKHGIEMYKL----AKKLS 431

Query: 235 ARPPGTRSGLE*QHPEITSASLGP 164
            R  G  +G+   H  ++  SL P
Sbjct: 432 KRVTGDANGIYNYHMNLSVFSLVP 455


>02_05_0204 -
           26721498-26721545,26721731-26721823,26723822-26723931,
           26724029-26724129,26724691-26724917
          Length = 192

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 260 RSDRWPYKGSTTRDQEWLGIAAS*NHECFVRATCDEPPSH 141
           R+D  P  GS+   +  L +A   +H C  RA C  P  H
Sbjct: 18  RNDAVPRAGSSRSRRSSLHLAGRHSHRCHARALCAAPDLH 57


>02_02_0329 + 9008948-9009089,9009454-9009638
          Length = 108

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 203 FQATPGPWWSSLCM-ASDQSVQRISLNTMXLQVESPTVY 316
           F  TPGP +  LC+ A+ +S+Q +  + +     +PTV+
Sbjct: 66  FTITPGPCFPMLCLTATRKSLQYLLASALLRDANAPTVF 104


>08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,
            4695422-4696072,4696179-4696395,4697040-4697111,
            4697167-4697257,4697367-4698363,4698914-4699044,
            4699584-4699802,4700110-4700805,4700912-4701121,
            4701606-4701710
          Length = 1271

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 412  FSVKTEQEIQHIALVTLEGHXTCYNGIYD 498
            F +   Q++   A+VT+ GH  CY  IY+
Sbjct: 993  FGLLLRQDVPEDAVVTMCGHVFCYQCIYE 1021


>04_04_0050 - 22360294-22361804,22362087-22362378,22363367-22363420,
            22363627-22363718,22364713-22364915,22365892-22366133,
            22366205-22366330,22366800-22366907,22367394-22367457,
            22367543-22367681,22367867-22368038,22368198-22368482
          Length = 1095

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 190  QDAAIPSHSWSLVVEPLYGQRSERTTDISKHHXPSSGVTNCLYQ 321
            Q AA P    +++V  L+G  SER  D+   H  + G +  ++Q
Sbjct: 938  QPAARPGRRKAVLVVSLHGAYSERIKDLYYEHGAAGGESVSVFQ 981


>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
            20773357-20773701,20773858-20773952,20774218-20774344,
            20774430-20774435
          Length = 1462

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = +1

Query: 244  GQRSERTTDISKHHXPSSGVTNCLYQSGCAHFGYWNRSGQNSRSEFRDGCSPRVXSFSVK 423
            G ++ERT DI K H    G +   +  G +    W  +  NSR+ +R   SP   ++ + 
Sbjct: 1034 GSKAERTIDIRKSH-ERGGASR--HIQGSSRVEQWVENSNNSRTTWRK--SPDYYNYGLP 1088

Query: 424  TEQEIQHIALVTLEGH 471
              +     A+  ++ +
Sbjct: 1089 GPRNAAEAAVAKMQSN 1104


>04_03_0060 - 10511421-10512494
          Length = 357

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 191 RMLLFQATPGPWWSSLCMA-SDQSVQRISLN 280
           R ++ +  P PW+ ++C+A +D+ V  IS+N
Sbjct: 226 RYIVDKVLPHPWYRAICVAGADRPVGSISVN 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,484
Number of Sequences: 37544
Number of extensions: 252667
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)