Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060365.seq
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   9e-04
SB_25997| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)                       28   3.8  
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)                   27   8.8  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 22/50 (44%), Positives = 29/50 (58%)
 Frame = +2

Query: 218 GPWWSSLCMASDQSVQRISLNTMXLQVESPTVYTSQGVPISVTGIAQVKI 367
           G W  +    +D  VQ ISL  M L      V T+QGV ++VTG+AQVK+
Sbjct: 313 GGWAFAWACVTD--VQSISLEVMTLNPTCEAVETAQGVAVTVTGVAQVKV 360



 Score = 35.5 bits (78), Expect = 0.025
 Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 159 TCGPNEALVIS-GCCYS-KPLLVPGGRAFVWPAI 254
           T GPNEALV+S GCC S     V GG AF W  +
Sbjct: 289 TVGPNEALVVSGGCCGSAAKKTVIGGWAFAWACV 322


>SB_25997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 206 QATPGPWWSSLCMASDQSVQRISLNTMXLQVESPTVYTSQ 325
           +  PG W+S +C+     + +   +T+   VE P  Y ++
Sbjct: 107 ELVPGKWFSMICLHLSDPILKAEFHTLSQAVEIPKQYITK 146


>SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)
          Length = 540

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 437 ISCSVFTEKLXTRGEQPSRNSDLEF 363
           +S + F +K+ TRGEQPS    L+F
Sbjct: 256 VSFANFFDKIRTRGEQPSNEDILKF 280


>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
          Length = 393

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 412 FSVKTEQEIQHIALVTLEGHXTCYNG 489
           F  K+ ++ +HIAL TLEGH     G
Sbjct: 83  FLGKSAEQTRHIALETLEGHQRAIMG 108


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 490  SHYSTXGDPPASPGLCAESLAPFLPRN 410
            SH S    PP+SP   + S AP LP N
Sbjct: 929  SHQSPQSAPPSSPCTPSSSTAPPLPTN 955


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,677,807
Number of Sequences: 59808
Number of extensions: 290140
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)