Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060365.seq
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U61956-3|ABA03115.1|  402|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U61956-2|ABA03113.1|  440|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U61956-1|ABA03114.1|  408|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    27   5.8  
AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 301 VTNCLYQSGCAHFGYWNRSGQNSRSEFRDGC--SPRVXSFSVKTEQEIQHIALVTLEGHX 474
           V++C Y+SG   FG+ N +G N   +++     +  V + +    QE  H A + ++G  
Sbjct: 411 VSSCAYESGAGPFGWCNHTGLNPSGKYKIVMFGNSWVANHAAMLYQECGHKAKILIQGSA 470

Query: 475 TCYNGIY 495
              + +Y
Sbjct: 471 NACDPLY 477


>Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical
           protein T10H4.4 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 8/25 (32%), Positives = 20/25 (80%)
 Frame = -1

Query: 437 ISCSVFTEKLXTRGEQPSRNSDLEF 363
           ++CSV+++++    ++P+R +D+EF
Sbjct: 13  VTCSVYSKRIVLEWKKPTRRNDIEF 37


>U61956-3|ABA03115.1|  402|Caenorhabditis elegans Hypothetical
           protein R13H7.2c protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 329 HPDWYRQLVTPLEGSWCL 276
           HPDW +    P+ GSW +
Sbjct: 311 HPDWVKVYAIPISGSWLI 328


>U61956-2|ABA03113.1|  440|Caenorhabditis elegans Hypothetical
           protein R13H7.2a protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 329 HPDWYRQLVTPLEGSWCL 276
           HPDW +    P+ GSW +
Sbjct: 349 HPDWVKVYAIPISGSWLI 366


>U61956-1|ABA03114.1|  408|Caenorhabditis elegans Hypothetical
           protein R13H7.2b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 329 HPDWYRQLVTPLEGSWCL 276
           HPDW +    P+ GSW +
Sbjct: 317 HPDWVKVYAIPISGSWLI 334


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 376 EFRDGCSPRVXSFSVKTEQEIQHIALVTL 462
           +  DGC  RV + +V  E  +QH+ L T+
Sbjct: 363 DINDGCGLRVLATAVIIENILQHVGLTTI 391


>Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical
           protein F41D3.2 protein.
          Length = 682

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 289 PSSGVTNCLYQSGCAHFGYWNRSGQNSRSEFRDGC--SPRVXSFSVKTEQEIQHIALVTL 462
           P+  V+ C+Y+S    FG+ N +G +   +++     +    +      QE  H A + +
Sbjct: 423 PNLFVSYCVYESDTGPFGWCNHTGLSPSGKYKIAVFGNSWAANHGEMIHQECGHKAKIII 482

Query: 463 EGHXTCYNGIY 495
           +G     + +Y
Sbjct: 483 QGSANACDPLY 493


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 320 WYRQLVTPLEGSWCLEISVVRSDRWP 243
           W R +  P     CL I++  SDR+P
Sbjct: 648 WQRDISLPSYHEMCLRIAITNSDRFP 673


>AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.7 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 437 ISCSVFTEKLXTRGEQPSRNSDLEF 363
           +  SVF+EK+  R +QP+   D++F
Sbjct: 148 VQFSVFSEKIELRWQQPTARKDIKF 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,674,234
Number of Sequences: 27780
Number of extensions: 210024
Number of successful extensions: 463
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)