Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060365.seq
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase fa...    30   1.0  
At5g11370.1 68418.m01327 hypothetical protein various predicted ...    29   1.8  
At3g18910.1 68416.m02401 F-box family protein contains Pfam:PF00...    29   2.4  
At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger) fa...    27   5.4  
At1g75860.1 68414.m08811 expressed protein                             27   5.4  
At1g73210.1 68414.m08472 expressed protein                             27   9.5  
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       27   9.5  

>At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 298

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -1

Query: 356 ERFQ*PKWAHPDWYRQLVTPLEGSWCLEISVVRSDRWPYKGSTTRDQEWL 207
           E++   KW H D + ++VTP  G+ C +++    +RW   G  T++ E++
Sbjct: 235 EKWSATKWIHVDSFDRIVTP-SGN-CTDMN-ESCERWAVLGECTKNPEYM 281


>At5g11370.1 68418.m01327 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 311

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 178 ASLGPHVTNPQVISNISQTKLLYNNXIF 95
           +SL  H+ N  V SN  QTKL YN+ IF
Sbjct: 20  SSLSVHLINLNV-SNFGQTKLAYNDHIF 46


>At3g18910.1 68416.m02401 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 388

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 273 DIRCTL*SLAIQRLDHQGPGVAWNSSILKSRVLR*GHM*RTPKSFRILVRRNYYTI 106
           +I C + + +++RL  +    AWN      R+L   H  ++ K FR L  RN Y I
Sbjct: 15  EILCRVPATSLRRL--RSTCKAWNRLFKGDRILASKHFEKSAKQFRSLSLRNDYRI 68


>At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 306

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 481 STXGDPPASPGLCAESLAPFLPRNXSXAESSHLGILTL-NFDLSDSSN 341
           S+  D  +SP LC +    FL R    + SS+L  +T+ +F+  D  N
Sbjct: 34  SSDSDSDSSPLLCPQCRVDFLERMDHDSSSSNLFDVTIGDFEEQDGEN 81


>At1g75860.1 68414.m08811 expressed protein
          Length = 283

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 295 SGVTNCLYQSGCAHFGYWNRSGQNSRSEFRDGCSPRVXS 411
           SG+T+ L +    H GY +   QNS+   RD   P V S
Sbjct: 79  SGLTDELEEPQ-KHLGYLSDGSQNSKKRIRDDSPPAVES 116


>At1g73210.1 68414.m08472 expressed protein 
          Length = 314

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 343 YWNRS--GQNSRSEFRDGCSPRVXSFSVKTEQEIQHIALVTLEGHXTCYN 486
           +W+ S  G+++   F  G +P+  SFS+  EQ  + I    L     CY+
Sbjct: 3   WWSSSTKGRSNLERFLLGITPKPPSFSLPQEQGKEEIEYFRLGDLWDCYD 52


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 281 TMXLQVESPTVYTSQGVPISVTGIAQVKIQGQNSEMAAL 397
           TM  QV SPT  TS  VP+S+   + V +  Q    ++L
Sbjct: 13  TMVDQVPSPTAQTSVQVPVSIPLPSPVVVADQTHPNSSL 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,824
Number of Sequences: 28952
Number of extensions: 198098
Number of successful extensions: 493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)