Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060364.seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.63 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    29   0.83 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    28   1.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.4  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    26   4.4  

>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 192 DAAIPSHSWSLVVEPLYGQRSERTTDISKHHDP 290
           D  +P HS   V EP+  +  E+ TD SK   P
Sbjct: 328 DGTLPIHSTQTVEEPIDTKAGEKLTDSSKQPSP 360


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +1

Query: 280  TMTLQVESPTVYTSQG-VPISVTGIAQVKIQGQNSEMLLSACEQFLGKTEQEIQHIALVT 456
            T +  +E P +Y+ Q  V IS   + +++++  +   +L      +G  E   +H+A+  
Sbjct: 1181 TSSSDLEQPRLYSLQKLVEISYYNMQRIRVEWSSIWNVLGRFFNMVGSDEN--RHVAVFA 1238

Query: 457  LEGHQRAIMGSMTVEEIS 510
            L+  ++  M  + +EE+S
Sbjct: 1239 LDSLRQLSMHFLEIEELS 1256


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 160 MWP*RST-RDFRMLLFQATPGPWWSSLCMASDPSVQRISLNTMTLQVESPTVYTSQGVP 333
           MWP  ST  D+   +F   P   WS +  + D S+Q I  + +T    +   +  +  P
Sbjct: 238 MWPELSTFPDWNKFIFHEYPPKPWSEILPSVDTSIQYIVSHLVTYSNRASPSFVIESFP 296


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 108  NNIIFALSLC*IVNYCV*QYS*QRLSFFY 22
            N+I   LS+C  +N CV  Y    LSF+Y
Sbjct: 1301 NSIFLILSICYTINICVKVYG---LSFYY 1326


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 189 EITSASLGPHVTNPQVISNISQTKL 115
           EIT  SLGP+  N  V++++ QT L
Sbjct: 40  EITRTSLGPNGKNKIVVNHLQQTFL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,424
Number of Sequences: 5004
Number of extensions: 59838
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)