Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060364.seq
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121 34 0.091
10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594 31 0.64
10_08_0404 + 17653942-17654877,17656616-17657137 31 0.64
03_04_0212 + 18670122-18670326,18671946-18672385 30 2.0
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 29 2.6
03_02_0088 - 5558079-5558663,5558762-5559388,5559490-5559559,555... 29 2.6
02_05_0204 - 26721498-26721545,26721731-26721823,26723822-267239... 29 2.6
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 29 4.5
10_06_0124 + 11013346-11013474,11013879-11013939,11014751-110148... 28 6.0
03_05_0092 - 20714102-20717902 28 6.0
03_02_0323 - 7450996-7451229,7451320-7451469,7451571-7451718,745... 28 6.0
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 7.9
02_02_0329 + 9008948-9009089,9009454-9009638 28 7.9
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 28 7.9
>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
Length = 499
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 433 IQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMGITVVSYTLKDIR 612
++ + +EG R + SMT+EEI + K ++ DL G+ + + +K +
Sbjct: 116 VKQLVKGVIEGETRVLAASMTMEEIFQGTKKFKQEVFDQVQLDLNKFGLYIYNANVKQLV 175
Query: 613 DEEG 624
DE G
Sbjct: 176 DEPG 179
>10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594
Length = 320
Score = 31.5 bits (68), Expect = 0.64
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = +1
Query: 250 DPSVQRISLNTMTLQVESPTVYTSQGVP-ISVTGIAQVKIQGQNSEMLLSACEQFLGKTE 426
D VQ +S + ++ P YT P I + +++ L C++ ++
Sbjct: 48 DIDVQAMSSEKLPFRL--PAAYTIGPSPKIKRNPVVDGPAPPADTQRRLEDCDEEAIRSP 105
Query: 427 QEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMGITVVSYTLKD 606
+ + +EG R + SMT+EEI + K +++ L +G+ + S ++D
Sbjct: 106 NHVIDLVKGVIEGETRVLASSMTMEEIFQGTKKFKQQVFDQVQLALNELGLYIYSANVQD 165
>10_08_0404 + 17653942-17654877,17656616-17657137
Length = 485
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +1
Query: 418 KTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMGITVVSYT 597
K + + +EG R + SMT+EEI + K ++ + +L G+ + +
Sbjct: 92 KLSHHVNELVKGVIEGETRVLAASMTMEEIFQGTKSFKQAVFENVQLELNQFGLIIYNAN 151
Query: 598 LKDIRDEEG 624
+K + D G
Sbjct: 152 VKQLVDVAG 160
>03_04_0212 + 18670122-18670326,18671946-18672385
Length = 214
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 471 LVTLQRHQGYVLNLLLRFTEKLLTRGEQHLGILTLNFDLSDSSNRNGHTL 322
L+T++ + N++ K + GE H I+ + FD+ D+S+ TL
Sbjct: 15 LMTVRDSNPWYANIVNYMVSKYIPLGENHQHIINIPFDVIDTSSHRAITL 64
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 241 MASDPSVQRISLNTMTLQVESPTVYTSQGVPISVTGI 351
MAS P ++ S ++ TL +SP GVP S+T +
Sbjct: 1 MASRPPLRTTSASSSTLSTDSPNSAPPGGVPQSITAL 37
>03_02_0088 -
5558079-5558663,5558762-5559388,5559490-5559559,
5559905-5559957
Length = 444
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 334 ISVTGIAQVKIQGQNSEMLLSACE--QFLGKTEQEIQHIALVTLEG 465
I+V +A ++ G++ EM C +G+TE ++ +AL +LEG
Sbjct: 92 ITVDNVAMLRCAGEHLEMT-EECRPGNLVGRTEAYLEEVALASLEG 136
>02_05_0204 -
26721498-26721545,26721731-26721823,26723822-26723931,
26724029-26724129,26724691-26724917
Length = 192
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 259 RSDRWPYKGSTTRDQEWLGIAAS*NHECFVRATCDEPPSH 140
R+D P GS+ + L +A +H C RA C P H
Sbjct: 18 RNDAVPRAGSSRSRRSSLHLAGRHSHRCHARALCAAPDLH 57
>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 247 SDPSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQNSEMLLSACEQFLGKTE 426
SDP+ QR+ + L E+ V +G ISV ++++ + L C ++G+T
Sbjct: 1107 SDPA-QRLVGDVALLSCETAVVSDRRG-SISVLSCPRLEVSESPEKNLAVHCSFYMGETA 1164
Query: 427 QEIQHIA 447
IQ +A
Sbjct: 1165 MSIQKVA 1171
>10_06_0124 +
11013346-11013474,11013879-11013939,11014751-11014838,
11017619-11017806,11017849-11018112,11018188-11018262,
11018263-11019698
Length = 746
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 450 GDAGGSPTCYNGIYDGRGNIKDRKIFSKKVFEVGVE*SNQHGNHS 584
GDA + Y G++ G +KD KIF F + V + GNHS
Sbjct: 229 GDAAKACLLYLGMFPGTRYLKDTKIFICMYF-LNVRKISAPGNHS 272
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 411 KLLTRGEQHLGILTLNFDLSDSSNRNGHT 325
K + +G QHL IL L++ SDS +R T
Sbjct: 783 KGILKGMQHLNILELSWSSSDSQSREAST 811
>03_02_0323 -
7450996-7451229,7451320-7451469,7451571-7451718,
7451816-7451895,7451990-7452150,7452417-7452665,
7452747-7453211,7453306-7453421,7453529-7453647,
7453749-7453834,7453970-7454120
Length = 652
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 439 HIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSD 561
H+ L L+ + S +S E+Y R+RCS+ +S D
Sbjct: 612 HLGLALLDVEDAESISSTEHSNLSPLEEYLRERCSRSSSFD 652
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 243 GQRSERTTDISKHHDPSSGVTNCLYQSGCAHFGYWNRSGQNSRSEFR 383
G ++ERT DI K H+ G + + G + W + NSR+ +R
Sbjct: 1034 GSKAERTIDIRKSHE-RGGASR--HIQGSSRVEQWVENSNNSRTTWR 1077
>02_02_0329 + 9008948-9009089,9009454-9009638
Length = 108
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 202 FQATPGPWWSSLCM-ASDPSVQRISLNTMTLQVESPTVY 315
F TPGP + LC+ A+ S+Q + + + +PTV+
Sbjct: 66 FTITPGPCFPMLCLTATRKSLQYLLASALLRDANAPTVF 104
>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 201 IPSHSWSLVVEPLYGQRSERTTDISKHHDPSSGVTNCLYQS 323
+PS W ++V + ++ HHDP CLY S
Sbjct: 1467 LPSIDWGVIVRRCMNVEAHIPDMLTNHHDPKLLREECLYIS 1507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,645,361
Number of Sequences: 37544
Number of extensions: 403474
Number of successful extensions: 1090
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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