Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060364.seq
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 1e-26
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0) 111 5e-25
SB_23523| Best HMM Match : LRR_1 (HMM E-Value=0.00074) 30 1.5
SB_25997| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_44182| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_4567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_56337| Best HMM Match : RVT_1 (HMM E-Value=1.7e-23) 28 6.1
SB_53657| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-19) 28 8.1
>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 117 bits (281), Expect = 1e-26
Identities = 63/140 (45%), Positives = 89/140 (63%)
Frame = +1
Query: 217 GPWWSSLCMASDPSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQNSEMLLS 396
G W + +D VQ ISL MTL V T+QGV ++VTG+AQVK+ + +L +
Sbjct: 313 GGWAFAWACVTD--VQSISLEVMTLNPTCEAVETAQGVAVTVTGVAQVKVMTE-PRLLKT 369
Query: 397 ACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMG 576
ACEQFLGKT ++I+ + L TLEGH RAI+G+++VEEI K + ++AS D+ MG
Sbjct: 370 ACEQFLGKTTRQIESVVLQTLEGHLRAILGTLSVEEIYKDREAFAALVREVASPDVGRMG 429
Query: 577 ITVVSYTLKDIRDEEGLLES 636
I ++S+T+KDI D L S
Sbjct: 430 IEILSFTIKDIEDHVDYLNS 449
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 158 TCGPNEALVIS-GCCYS-KPLLVPGGRAFVWPAI 253
T GPNEALV+S GCC S V GG AF W +
Sbjct: 289 TVGPNEALVVSGGCCGSAAKKTVIGGWAFAWACV 322
>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
Length = 393
Score = 111 bits (267), Expect = 5e-25
Identities = 60/100 (60%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Frame = +1
Query: 349 IAQVKIQGQNSEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYS 528
I QVKIQGQN EML +AC+QFLGK+ ++ +HIAL TLEGHQRAIMG+MTVE
Sbjct: 63 ILQVKIQGQNQEMLHAACQQFLGKSAEQTRHIALETLEGHQRAIMGTMTVE--------- 113
Query: 529 RKRCSKLASSDLINMGITVVSYTLKDIRD-EEGLLESSRV 645
+ASSDL+NMGI++VSYT+KDIRD EE + E +R+
Sbjct: 114 ------VASSDLVNMGISIVSYTIKDIRDEEEAIAEEARL 147
>SB_23523| Best HMM Match : LRR_1 (HMM E-Value=0.00074)
Length = 615
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 436 QHIALVTLEGHQRAIMGSMTVEEISKTEKY---SRKRCSKLASSDLINMGITVVSYTLK 603
Q +A +TL + GS ++ + K KY S KR K+++ + N+GI +V +TL+
Sbjct: 40 QGLAALTLAENNFTSKGSQSLGQALKGSKYMDSSLKRGEKVSARNNTNVGIHLVRFTLR 98
>SB_25997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 205 QATPGPWWSSLCMASDPSVQRISLNTMTLQVESPTVYTSQ 324
+ PG W+S +C+ + + +T++ VE P Y ++
Sbjct: 107 ELVPGKWFSMICLHLSDPILKAEFHTLSQAVEIPKQYITK 146
>SB_44182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 285 DPSSGVTNCLYQSGCAHFGYWNRSGQNSRSEFRDAALR 398
DP+S V L++ HFG+W + +N+ E RD L+
Sbjct: 30 DPNSFVAGELHE----HFGHWGKIAKNTPPERRDQVLQ 63
>SB_4567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 285 DPSSGVTNCLYQSGCAHFGYWNRSGQNSRSEFRDAALR 398
DP+S V L++ HFG+W + +N+ E RD L+
Sbjct: 110 DPNSFVAGELHE----HFGHWGKIAKNTPPERRDQVLQ 143
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/87 (20%), Positives = 40/87 (45%)
Frame = +1
Query: 400 CEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMGI 579
C QF EQ + HI+ + L + ++ S+ E + +K ++ ++ SD +
Sbjct: 679 CHQFTSGGEQLVNHISNIGLLTTKIGLLSSLQ-EYVRVLDKVGSRQ--RITLSDFVPETY 735
Query: 580 TVVSYTLKDIRDEEGLLESSRVWLVQP 660
+ + T K+ R + + +W+ +P
Sbjct: 736 ALTNQTEKE-RFANSIYQEGEIWICKP 761
>SB_56337| Best HMM Match : RVT_1 (HMM E-Value=1.7e-23)
Length = 846
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 475 HVGDPPASPGLCAESLAPFYRETAHTRRAASRNSD 371
+VG+ A+P C S YRE TRR R D
Sbjct: 800 YVGETTAAPSECLLSRHQRYRENTLTRRGRCRTDD 834
>SB_53657| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-19)
Length = 317
Score = 27.9 bits (59), Expect = 8.1
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Frame = +1
Query: 229 SSLCMASDPSVQRISLNTMTLQVESPTVYTSQGVPISV----TGIAQVKIQGQNSEMLLS 396
S LC++ D + N L V GV SV T I Q + Q + + S
Sbjct: 125 SLLCLSVDRLIAVSVPNRYRLIVSKARAVMIIGVVWSVSLILTAIVQFALDKQGQDTMKS 184
Query: 397 ACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTE---KYSRK 534
+G Q + +VTL ++ +T EEIS++ KY RK
Sbjct: 185 VPFGMMGIAIVAFQVMVIVTLHRKRQIKPTELTEEEISQSRSRVKYERK 233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,378,894
Number of Sequences: 59808
Number of extensions: 471465
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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