Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060364.seq
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81537-4|CAB04375.2| 669|Caenorhabditis elegans Hypothetical pr... 30 1.8
U61956-3|ABA03115.1| 402|Caenorhabditis elegans Hypothetical pr... 28 5.4
U61956-2|ABA03113.1| 440|Caenorhabditis elegans Hypothetical pr... 28 5.4
U61956-1|ABA03114.1| 408|Caenorhabditis elegans Hypothetical pr... 28 5.4
U28941-3|AAM98025.1| 799|Caenorhabditis elegans Temporarily ass... 28 5.4
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 28 5.4
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 28 5.4
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 28 5.4
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical ... 28 7.1
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los... 27 9.4
>Z81537-4|CAB04375.2| 669|Caenorhabditis elegans Hypothetical
protein F41D3.4 protein.
Length = 669
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 300 VTNCLYQSGCAHFGYWNRSGQNSRSEFR 383
V++C Y+SG FG+ N +G N +++
Sbjct: 411 VSSCAYESGAGPFGWCNHTGLNPSGKYK 438
>U61956-3|ABA03115.1| 402|Caenorhabditis elegans Hypothetical
protein R13H7.2c protein.
Length = 402
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 328 HPDWYRQLVTPLEGSWCL 275
HPDW + P+ GSW +
Sbjct: 311 HPDWVKVYAIPISGSWLI 328
>U61956-2|ABA03113.1| 440|Caenorhabditis elegans Hypothetical
protein R13H7.2a protein.
Length = 440
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 328 HPDWYRQLVTPLEGSWCL 275
HPDW + P+ GSW +
Sbjct: 349 HPDWVKVYAIPISGSWLI 366
>U61956-1|ABA03114.1| 408|Caenorhabditis elegans Hypothetical
protein R13H7.2b protein.
Length = 408
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 328 HPDWYRQLVTPLEGSWCL 275
HPDW + P+ GSW +
Sbjct: 317 HPDWVKVYAIPISGSWLI 334
>U28941-3|AAM98025.1| 799|Caenorhabditis elegans Temporarily
assigned gene nameprotein 149, isoform d protein.
Length = 799
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +1
Query: 373 QNSEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRC 540
+ SE ++ ++ ++EQ+IQHI + + + + + +KY R RC
Sbjct: 733 ETSENMIDYFDKVAAESEQQIQHIRRIPSKTTMGQLPLCRVPRDCEEVDKYGRWRC 788
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -1
Query: 590 DTTVIPMLIRSLDANFEHLFREYFSVFDISSTV---IDPIIARW 468
DT+++PML +D ++ +++ DIS ++ PIIA W
Sbjct: 377 DTSLLPMLGHLVDTRHVSVYGSVYAIADISYSLAYAFGPIIAGW 420
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -1
Query: 590 DTTVIPMLIRSLDANFEHLFREYFSVFDISSTV---IDPIIARW 468
DT+++PML +D ++ +++ DIS ++ PIIA W
Sbjct: 377 DTSLLPMLGHLVDTRHVSVYGSVYAIADISYSLAYAFGPIIAGW 420
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -1
Query: 590 DTTVIPMLIRSLDANFEHLFREYFSVFDISSTV---IDPIIARW 468
DT+++PML +D ++ +++ DIS ++ PIIA W
Sbjct: 377 DTSLLPMLGHLVDTRHVSVYGSVYAIADISYSLAYAFGPIIAGW 420
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical protein
T06E4.1 protein.
Length = 1295
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/108 (18%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = +1
Query: 292 QVESPTVYTSQGVPISVT--GIAQVKIQGQNSEMLLSACEQFLGKTEQEIQH-IALVTLE 462
++E+ V+ +Q + + ++Q+++Q Q L A +++ + EQ+ QH I ++ E
Sbjct: 1084 RLEASNVWKTQAMNVGTLTESLSQLQVQLQQMNEKLVASDKYAVEVEQQAQHDITVIQEE 1143
Query: 463 GHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMGITVVSYTLKD 606
++++ + +I++ E+ + ++ + + V LKD
Sbjct: 1144 KNEQSAALEEALSKIAELEEQLGRAQKEIVRLEKVCDDFDDVERELKD 1191
>AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical
protein Y26D4A.8 protein.
Length = 380
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 379 SEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAI 480
S L +ACE LG +QE +H + L+GH R+I
Sbjct: 225 SVKLQAACEAVLG--QQESRHEQIHELQGHARSI 256
>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
protein 4 protein.
Length = 1392
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 319 WYRQLVTPLEGSWCLEISVVRSDRWP 242
W R + P CL I++ SDR+P
Sbjct: 648 WQRDISLPSYHEMCLRIAITNSDRFP 673
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,575
Number of Sequences: 27780
Number of extensions: 336264
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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