Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060364.seq
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    27   0.13 
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    27   0.22 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.51 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.3  

>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 490 MTVEEISKTEKYSRKRCSK 546
           MT+EE+ KT K  RK CSK
Sbjct: 1   MTIEELKKTIKNLRKVCSK 19


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 448 LVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSK 546
           L+ L   +  +   MT+EE  KT K  RK CSK
Sbjct: 13  LLVLLAIEDTMSKKMTIEEAKKTIKNLRKVCSK 45


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 421  TEQEIQHIALVTLEGHQRAIMGSMT 495
            T QE+  +  VTL GHQ+ IM S+T
Sbjct: 958  TVQELTALG-VTLVGHQKKIMNSVT 981


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 150 GSSHVALTKHS*FQDAAIPSHSWS 221
           G SH+  T H     AA P H  S
Sbjct: 422 GHSHIHATPHHHHSHAATPHHQHS 445


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 593 YDTTVIPMLIRSLDANFEHLFRE 525
           + TT+ P+L   + A + + F+E
Sbjct: 307 FSTTINPILYNVMSAKYRNAFKE 329


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 302 HQLSIPVRVCPFRLLES-LRSKFKVRIPRCC 391
           + LS  V    + ++ +  R  FK+ +P CC
Sbjct: 337 YYLSTTVNPLLYNIMSNKFREAFKLMLPNCC 367


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 507 YFLDRHRSHYSTLVTLQRHQGYV 439
           Y LD H  H++    +  H G++
Sbjct: 274 YHLDNHHVHHANHHAILGHSGFL 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,643
Number of Sequences: 438
Number of extensions: 3917
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)