Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060364.seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64870.1 68418.m08160 expressed protein                             35   0.044
At5g25260.1 68418.m02994 expressed protein                             35   0.058
At5g25250.1 68418.m02993 expressed protein                             35   0.058
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR...    35   0.058
At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase fa...    30   1.6  
At3g61570.1 68416.m06896 intracellular protein transport protein...    30   1.6  
At3g18910.1 68416.m02401 F-box family protein contains Pfam:PF00...    29   2.2  
At5g57360.1 68418.m07166 F-box family protein / LOV kelch protei...    29   3.8  
At5g11370.1 68418.m01327 hypothetical protein various predicted ...    28   5.0  
At4g28740.1 68417.m04110 expressed protein                             27   8.8  

>At5g64870.1 68418.m08160 expressed protein
          Length = 479

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +1

Query: 418 KTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMGITVVSYT 597
           K    +  +    +EG  R ++ SMT+EE+ K  K  +K        +L   G+ + +  
Sbjct: 90  KHSNHVNELVQGVIEGETRVLVASMTMEEVFKGTKEFKKEVFDKVQLELNQFGLVIYNAN 149

Query: 598 LKDIRDEEG 624
           +K + D  G
Sbjct: 150 VKQLVDVPG 158


>At5g25260.1 68418.m02994 expressed protein
          Length = 463

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 418 KTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMGITVVSYT 597
           K    +  +    +EG  R +  SMT+EEI K  K  +K        +L   G+ + +  
Sbjct: 89  KQSNHVNELVEGVIEGETRVLAASMTMEEIFKGTKEFKKEVFDKVQLELDQFGLVIYNAN 148

Query: 598 LKDIRDEEG 624
           +K + D  G
Sbjct: 149 VKQLVDVPG 157


>At5g25250.1 68418.m02993 expressed protein
          Length = 470

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 418 KTEQEIQHIALVTLEGHQRAIMGSMTVEEISKTEKYSRKRCSKLASSDLINMGITVVSYT 597
           K    +  +    +EG  R +  SMT+EEI K  K  +K        +L   G+ + +  
Sbjct: 89  KDSNHVHELVEGVIEGETRVLAASMTMEEIFKGTKEFKKEVFDKVQLELNQFGLVIYNAN 148

Query: 598 LKDIRDEEG 624
           +K + D  G
Sbjct: 149 VKQLVDVPG 157


>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 981

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -2

Query: 424 PFYRETAHTRRAASRNSDLEF*PER 350
           PFY E A   +++SRNSDL+F PER
Sbjct: 709 PFYGEDASWNQSSSRNSDLDFLPER 733


>At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 298

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 355 ERFQ*PKWAHPDWYRQLVTPLEGSWCLEISVVRSDRWPYKGSTTRDQEWL 206
           E++   KW H D + ++VTP  G+ C +++    +RW   G  T++ E++
Sbjct: 235 EKWSATKWIHVDSFDRIVTP-SGN-CTDMN-ESCERWAVLGECTKNPEYM 281


>At3g61570.1 68416.m06896 intracellular protein transport protein
           USO1-related contains weak similarity to intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 712

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +1

Query: 331 PISVTGIAQVKIQGQNSEMLLSACEQFLGKTEQEI----QHIALVTLEGHQRAIMGSMTV 498
           P S  G  +++   Q  EM L   ++   K  QE+    QH+     E  ++    S  +
Sbjct: 335 PESFPGKEEMEQSLQRLEMDLKETQRERDKARQELKRLKQHLLEKETEESEKMDEDSRLI 394

Query: 499 EEISKTEKYSRKRCSKLASS 558
           EE+ +T +Y R + S L  S
Sbjct: 395 EELRQTNEYQRSQISHLEKS 414


>At3g18910.1 68416.m02401 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 388

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 272 DIRCTLGSLAIQRLDHQGPGVAWNSSILKSRVLR*GHM*RTPKSFRILVRRNYYTI 105
           +I C + + +++RL  +    AWN      R+L   H  ++ K FR L  RN Y I
Sbjct: 15  EILCRVPATSLRRL--RSTCKAWNRLFKGDRILASKHFEKSAKQFRSLSLRNDYRI 68


>At5g57360.1 68418.m07166 F-box family protein / LOV kelch protein 1
           (LKP1) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to clock-associated PAS protein ZTL; ZEITLUPE
           GI:7839456, LOV kelch protein 1 GI:11610573, Adagio 1
           GI:13487068 from [Arabidopsis thaliana]; contains Pfam
           profile PF01344: Kelch motif; identical to cDNA Adagio 1
           (ADO1) GI:13487067; identical to cDNA LKP1 mRNA for LOV
           kelch protein 1,  GI:11610572
          Length = 609

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 512 RQKNILEKGVRSWRRVI*STWESQLCRIL*RTSETRRGYLKALGYGSYSR 661
           R+  +L K    WRRV  + W S+  R+L    ET  G  K LG+G  +R
Sbjct: 226 RRLYVLTKNEDLWRRVCQNAWGSETTRVL----ETVPG-AKRLGWGRLAR 270


>At5g11370.1 68418.m01327 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 311

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 177 ASLGPHVTNPQVISNISQTKLLYNNIIF 94
           +SL  H+ N  V SN  QTKL YN+ IF
Sbjct: 20  SSLSVHLINLNV-SNFGQTKLAYNDHIF 46


>At4g28740.1 68417.m04110 expressed protein
          Length = 347

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
 Frame = +1

Query: 373 QNSEMLLSACEQFLGKTEQEIQH----IALVTLEGHQRAIMGSMTVEEISKTEKYSRKRC 540
           +N++M   + E+ LGK +  ++     I++  L G  R ++ +   E I +  K S++  
Sbjct: 172 KNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYT 231

Query: 541 SKLASSDLINMGIT------VVSYTLKDIRDEEGLLESSRVWLVQP 660
             L    ++ +         V+ +   DI DEE      ++W V P
Sbjct: 232 QGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTP 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,691
Number of Sequences: 28952
Number of extensions: 317272
Number of successful extensions: 886
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)