Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060363.seq
         (268 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.046
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.046
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   0.75 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   0.75 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       19   7.0  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    19   9.3  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    19   9.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.046
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 203 LYAKVLSLL*WCTRLGNGNLMVLLWNCLT 117
           +Y K LS L W  R GNG LM+  W  +T
Sbjct: 583 IYFKWLSFLSWF-RYGNGALMINQWENVT 610


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.046
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 203 LYAKVLSLL*WCTRLGNGNLMVLLWNCLT 117
           +Y K LS L W  R GNG LM+  W  +T
Sbjct: 583 IYFKWLSFLSWF-RYGNGALMINQWENVT 610


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 0.75
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 111 STGQTVPQQHHQIPIAQTCAPL 176
           S G T P+   +IP+A   APL
Sbjct: 74  SDGTTSPEPDPEIPVAPEPAPL 95


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 0.75
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 119 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCN 229
           S+  ++   D + PN      DL PS   G +  SC+
Sbjct: 136 SSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSADSCD 172



 Score = 22.2 bits (45), Expect = 1.00
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 230 NYKK*VLGLLYAKVLSLL*WCTRLGNGN 147
           N +K   G ++AK+LS+L     LGN N
Sbjct: 494 NRRKPKPGTIFAKLLSVLTELRTLGNQN 521


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 224 CNCNVRHITINPCK 265
           CN N    + NPC+
Sbjct: 103 CNINTDDCSPNPCR 116


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 6/27 (22%), Positives = 13/27 (48%)
 Frame = +2

Query: 5   TRVIKAIEIWELDTEPELTQYRSSKWK 85
           ++++    +  L+ EPE   +    WK
Sbjct: 35  SQIVGVFPLNHLNEEPEKLHFTFKSWK 61


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -2

Query: 135 VVELFDLWTATXSSLDYF 82
           +   F+ WT   S  D+F
Sbjct: 65  IAYFFNFWTILFSRSDFF 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,193
Number of Sequences: 336
Number of extensions: 1198
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4378513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)