Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060363.seq
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    51   2e-08
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    51   2e-08
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   1.8  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   1.8  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   2.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   2.4  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    24   3.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   4.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    24   4.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   5.5  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   5.5  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    23   7.2  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    23   9.6  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +1

Query: 22  YRDMGARHRARAHSIQIIK-VEVIKAAACXXPQVKQFHNSTIRFPLPKR---VHHYKRLN 189
           Y DM ARHRAR  SI+I+K VEV K        VKQ  N  ++FPLP R   V       
Sbjct: 106 YADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKK 165

Query: 190 TFAYKRPSTYF 222
            FA  RPST++
Sbjct: 166 VFAPHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +1

Query: 22  YRDMGARHRARAHSIQIIK-VEVIKAAACXXPQVKQFHNSTIRFPLPKR---VHHYKRLN 189
           Y DM ARHRAR  SI+I+K VEV K        VKQ  N  ++FPLP R   V       
Sbjct: 106 YADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKK 165

Query: 190 TFAYKRPSTYF 222
            FA  RPST++
Sbjct: 166 VFAPHRPSTFY 176


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -2

Query: 189 IKSLVVVHTFGQWES---DGAVVELFD--LWTATXSSLD 88
           I SLV +H +G W++     A+V  F+   W A  S  D
Sbjct: 281 INSLVAIHDYGAWDTVLMGKAIVSSFENLNWEAMLSMFD 319


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 153 WESDGAVVELFDLWTATXSSLDY 85
           WE  G  V+ +  W A   S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 118 VKQFHNSTIRFPLPKRVHHYKRLN 189
           +++F      FP  K+VHHY+  N
Sbjct: 414 LRKFEIQNANFPSVKKVHHYQYPN 437


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 103 CXXPQVKQFHNSTIRFPLPKRVHHYK 180
           C    VK      I FP+P + H YK
Sbjct: 262 CYVKPVKNLRRLDIVFPIPGQYHKYK 287


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 116 RSNSSTTA-PSDSHCPNVCTTTRDLIPSRTRG 208
           RSN+ T   PS+    NVC  +++L  S  +G
Sbjct: 40  RSNTPTLIDPSNKETANVCPISKNLFQSYPKG 71


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 27  RYGS*TQSPSSLNTDHQSGSNQGCCXXXSTGQTVPQQH 140
           R G+ T +  +L +   + SN G      TG T+P  H
Sbjct: 104 RQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 242  DVHYNYKK*VLGLLYAKVLSLL*WCTRLGNG 150
            D  Y Y   + G  +  +L ++ W T  G+G
Sbjct: 966  DTVYGYLMRIFGTFFGAILGMVIWYTGSGHG 996


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 192 GIKSLVVVHTFGQWESDGAVVELFDLWTATXSSLDYFHFD 73
           G+K  +  H F Q  SD + V +  L T+T   L Y+++D
Sbjct: 538 GLKDCID-HIFQQLISDTSSVTVRRLATSTLIRLFYYYYD 576


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 123 TVPQQHHQIPIAQTCAPLQE 182
           TVP+   QIP+ Q  +P QE
Sbjct: 106 TVPEDLVQIPMQQMSSPAQE 125


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 143 SDSHCPNVCTTTRDLI 190
           S + CP++C+ T D I
Sbjct: 414 SKTSCPSICSVTEDYI 429


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 134 LWNCLTCG 111
           LW CLTCG
Sbjct: 183 LWMCLTCG 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,774
Number of Sequences: 5004
Number of extensions: 17887
Number of successful extensions: 56
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)