Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060363.seq
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 52 6e-08
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 51 1e-07
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 49 4e-07
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 30 0.22
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 30 0.22
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 28 1.2
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 27 1.6
08_01_0227 + 1827461-1827674,1827844-1828143,1828272-1828434,182... 27 1.6
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277... 27 2.7
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 26 3.6
10_01_0269 - 2865731-2865752,2866627-2868605 26 3.6
08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120 26 3.6
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 26 3.6
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 26 3.6
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779... 26 3.6
01_06_0282 - 28160321-28160417,28160585-28160653,28161090-281611... 26 3.6
04_01_0288 + 3824337-3826385 26 4.8
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814 26 4.8
05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615 25 6.3
04_03_0250 - 13477020-13477550,13477572-13477933,13478026-134786... 25 6.3
04_03_0087 - 10983528-10984114,10984578-10985160 25 6.3
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 25 6.3
01_01_1099 - 8700627-8700710,8701148-8701200,8701287-8701344,870... 25 6.3
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 25 8.3
08_02_0056 + 11751585-11751672,11751741-11752060,11755363-117554... 25 8.3
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 52.0 bits (119), Expect = 6e-08
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 16 QGYRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFHNSTIRFPL---PKRVHHYKRL 186
Q Y +M +RHR R IQIIK + C KQFHNS I+FPL R K
Sbjct: 107 QMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLK 166
Query: 187 NTFAYKRPSTY 219
TF RP+ +
Sbjct: 167 TTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 50.8 bits (116), Expect = 1e-07
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 16 QGYRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFHNSTIRFPL---PKRVHHYKRL 186
Q Y +M +RHR R IQIIK + C KQFHN +I+FPL R K
Sbjct: 124 QMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLK 183
Query: 187 NTFAYKRPSTY 219
TF RP+ +
Sbjct: 184 TTFKASRPNLF 194
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 49.2 bits (112), Expect = 4e-07
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 16 QGYRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFHNSTIRFPL---PKRVHHYKRL 186
Q Y +M +RHR R IQIIK + C KQFH S I+FPL R K
Sbjct: 107 QMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLK 166
Query: 187 NTFAYKRPSTY 219
TF RP+ +
Sbjct: 167 TTFKASRPNLF 177
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 30.3 bits (65), Expect = 0.22
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 63 NTDHQSGSNQGCCXXXSTG----QTVPQQHHQIPIAQTCAP 173
N H G N+G T QT P+QH Q+PI T P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 30.3 bits (65), Expect = 0.22
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 48 SPSSLNTDHQSGSNQGCCXXXSTGQTVPQQHH 143
S + L T ++G+N C STGQT P Q H
Sbjct: 561 SATKLATKCENGANVSCDGVGSTGQTPPLQQH 592
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 130 HNSTIRFPLPKRVHHYKRLNTFAY 201
H+ +R PLP +HH TFAY
Sbjct: 221 HDPEVRDPLPLTIHHLPIAVTFAY 244
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 45 QSPSSLNTDHQSGSNQGCCXXXSTGQTVPQQHHQIPIAQTCAPLQET 185
Q P S T++Q SN Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>08_01_0227 +
1827461-1827674,1827844-1828143,1828272-1828434,
1828453-1828489,1829207-1829737,1830677-1830829
Length = 465
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 14 IKAIEIWELDTEPELT 61
+K E WELD+EPELT
Sbjct: 111 LKEEENWELDSEPELT 126
>09_06_0150 -
21225086-21225511,21225775-21226125,21227180-21227718,
21227813-21227929,21228038-21228290
Length = 561
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 125 SSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTS 223
S + SD P TTTR S +RG+A +S
Sbjct: 25 SESETSSDCSAPTTTTTTRRFASSSSRGVASSS 57
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 127 FHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 222
F +S P+P V H K L F Y RPS F
Sbjct: 151 FPSSNFATPMPTSVEHLKLL--FCYLRPSPTF 180
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 209 LALTSCNCNVRHITINPCK 265
LALT CN H+ +N CK
Sbjct: 556 LALTKFACNENHLHVNHCK 574
>08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120
Length = 348
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 146 LMVLLWNCLTCGXXXAAALITSTLMIC 66
L V W C TCG A L+ + C
Sbjct: 104 LAVFAWMCRTCGFAPTAELLATLFTAC 130
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 26 EIWELDTEPELT 61
E WELD+EPELT
Sbjct: 107 ENWELDSEPELT 118
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 89 SRLLXVAVHRSNSSTTAPSDSHCPNVCTTTRDLIPSRTR 205
S L A S + T P+ + V TTR +P+R R
Sbjct: 80 SFLSTAAATNSTDTATVPTTTAAARVAATTRPTLPARQR 118
>02_04_0364 +
22374735-22374749,22374903-22375076,22377858-22377935,
22379270-22380407,22380507-22380901,22382230-22382416,
22382872-22382942,22383705-22383755
Length = 702
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 107 AVHRSNSSTTAPSDSHCPNVCTTTRDLI 190
AV +SS PS++H P+ T+DL+
Sbjct: 557 AVPEKSSSVVCPSENHEPHAKPETQDLV 584
>01_06_0282 -
28160321-28160417,28160585-28160653,28161090-28161145,
28161650-28161741,28162314-28162398,28162512-28162628,
28162766-28162798,28163109-28163199,28163908-28163967,
28164115-28164180,28165238-28165430,28165665-28165821
Length = 371
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 153 WESDGAVVELFDLWTA 106
W SDG VE +D WTA
Sbjct: 83 WPSDGGGVEEYDPWTA 98
>04_01_0288 + 3824337-3826385
Length = 682
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 225 QEVSARPLVREGIKSLVVVHTFGQWESDGAVVELFDLW 112
+EV P V + +V T +W+ + + LFDLW
Sbjct: 595 REVQPGPKVPRLRYARIVADTLYKWKDEDPIDVLFDLW 632
>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
Length = 582
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 225 QEVSARPLVREGIKSLVVVHTFGQWESDGAVVELFDLW 112
+EV P V + +V T +W+ + + LFDLW
Sbjct: 495 REVQPGPKVPRLRYARIVADTLYKWKDEDPIDVLFDLW 532
>05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615
Length = 458
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +2
Query: 104 VAVHRSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNV 238
V HR D P T R L+ SR + L + C CN+
Sbjct: 279 VVDHREWLMFAPQDDLGYPRPVATARYLVESREQLLMVLKCTCNL 323
>04_03_0250 -
13477020-13477550,13477572-13477933,13478026-13478682,
13480142-13480232
Length = 546
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = -3
Query: 146 LMVLLWNCLTCGXXXAAALITSTLMIC 66
L V W C TCG A L + C
Sbjct: 78 LAVFAWMCRTCGFVPTAELFATLFTAC 104
>04_03_0087 - 10983528-10984114,10984578-10985160
Length = 389
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = -3
Query: 146 LMVLLWNCLTCGXXXAAALITSTLMIC 66
L+V W C TCG A L C
Sbjct: 108 LVVFAWMCCTCGFDPTAELFAVLFTTC 134
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 129 ELFDLWTATXSSLDYFHFDD 70
ELFD+W S +D FDD
Sbjct: 285 ELFDIWKNVNSIVDNITFDD 304
>01_01_1099 -
8700627-8700710,8701148-8701200,8701287-8701344,
8701886-8702032,8702386-8702448,8702559-8702630,
8703154-8703234,8703312-8703362,8703519-8703615,
8704154-8704384,8704882-8705142,8705231-8705394,
8705547-8705586,8707223-8707323
Length = 500
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 257 GLLLCDVHYNYKK*VLGLLYAKVLSLL*WCTRLGNGNLMVLLWNCL 120
GL L + ++K + GLL + + TR+G+ N ++ L+ CL
Sbjct: 104 GLPLETIRSDFKSGLEGLLKERPTKAIFIGTRIGDPNAVIFLFPCL 149
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 64 IQIIKVEVIKAAACXXPQVKQFHNSTIRFPLPKRVH 171
+Q+ K+ + P+ FHN + R P+P V+
Sbjct: 404 VQVEKLRALFRPIIVMPESALFHNDSDRHPVPPAVY 439
>08_02_0056 +
11751585-11751672,11751741-11752060,11755363-11755483,
11755950-11756137,11756224-11756355,11756535-11756577,
11757298-11757395
Length = 329
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +1
Query: 1 RHESNQGYRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFHNSTIRFPLPKRVHHYK 180
+HE QGY++ R + K K +K + S ++P P +V HY+
Sbjct: 234 KHELKQGYKEKLIDIREEI----LRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTKVSHYE 289
Query: 181 RLNTFAY 201
FA+
Sbjct: 290 TEGLFAF 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,017,155
Number of Sequences: 37544
Number of extensions: 122619
Number of successful extensions: 387
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -