Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060363.seq
(268 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 1e-08
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30) 28 1.0
SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7) 27 2.4
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13) 27 3.1
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14) 27 3.1
SB_49801| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22) 26 4.2
SB_5048| Best HMM Match : DUF821 (HMM E-Value=0.22) 25 7.3
SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15) 25 7.3
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0) 25 9.6
SB_56931| Best HMM Match : AFP (HMM E-Value=0.0013) 25 9.6
>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = +1
Query: 22 YRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFH 132
YRDM ARHRAR +SIQI+KVEVI A+ P VKQ H
Sbjct: 310 YRDMAARHRARGYSIQIMKVEVIPASKARRPHVKQMH 346
>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
Length = 300
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 61 SIQIIKVEVIKAAACXXPQVKQFHNSTIRFPLPKRVHHYKRLNT 192
S++I ++ AC P V HN +R + + VHH KR+ T
Sbjct: 246 SLEITCFFLLHVNACCNPVVYSLHNPKLRKCMNRLVHH-KRVRT 288
>SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)
Length = 130
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +2
Query: 152 HCPNVCTTTRDLIPSRTRGLALTSCNCNV 238
H +VC T R + TR L C C +
Sbjct: 31 HAQSVCCTVRAVFTHHTRSACLLHCPCRI 59
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +2
Query: 152 HCPNVCTTTRDLIPSRTRGLALTSCNCNV 238
H VC T R + TR L C C +
Sbjct: 80 HAQRVCGTARAVFTHHTRSACLLQCPCRI 108
>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
Length = 1072
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 45 QSPSSLNTDHQSGSNQGCCXXXSTGQTVPQQHHQIP 152
QSPS+ N + Q PQQHHQ+P
Sbjct: 313 QSPSNHNAQPMTTQAAAFFQQVPEQQQSPQQHHQLP 348
>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
Length = 1931
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 164 VCTTTRDLIPSRTRGLALTSCNCNVRHITINPCKK 268
+C T I SRTRGL ++CN V + ++P K
Sbjct: 820 LCDTCAFNITSRTRGLCPSTCNKTV-SVRVDPSGK 853
>SB_49801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 212 ALTSCNCNVRHITINPCKK 268
AL S +C ++ I IN CKK
Sbjct: 47 ALISTHCTIKSIDINSCKK 65
>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
Length = 834
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +2
Query: 38 LDTE--PELT-QYRSSKWK*SRLLXVAVHRSNSSTTAPS---DSHCPNVCTTTRDLIPSR 199
LDT+ P++ +R S+ + VA + + P D H P C+T+ I R
Sbjct: 500 LDTQNTPDVACNHRQSQTRTQSFFAVAGASTGTLKRTPKPHRDRHAPCACSTSTKCIARR 559
Query: 200 TRGLALTSCN 229
L+L +C+
Sbjct: 560 LEHLSLVTCH 569
>SB_5048| Best HMM Match : DUF821 (HMM E-Value=0.22)
Length = 374
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 251 LLCDVHYNYKK*VLGLLYAKVLSLL*WCTRLGNGNLMVLL 132
L C +++ LG+LY K + + + T G N +VL+
Sbjct: 85 LCCGINHKVDVARLGMLYCKTIQMARFQTEKGKQNSLVLV 124
>SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)
Length = 456
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 257 GLLLCDVHYNYKK*VLGLLYAKVLSLL*WCTRLGNG 150
G +LC +H ++G++Y +++ + LGNG
Sbjct: 313 GFILCHLHVTIPALIIGIVYPRLIVIYRKRLVLGNG 348
>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 564
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 69 DHQSGSNQGCCXXXSTGQTVPQQH 140
DH S ++GC + G+ PQ H
Sbjct: 398 DHHSRCSEGCVPGLNRGKPYPQVH 421
>SB_56931| Best HMM Match : AFP (HMM E-Value=0.0013)
Length = 383
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 140 PSDSHCPNVCTTTRDLIPSRTRGL 211
P SHC CTT +RT G+
Sbjct: 25 PVVSHCSTTCTTGEFCFTTRTTGI 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,227,243
Number of Sequences: 59808
Number of extensions: 147027
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 16,821,457
effective HSP length: 65
effective length of database: 12,933,937
effective search space used: 297480551
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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