Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060363.seq
(268 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal pro... 74 1e-14
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 28 0.79
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 28 0.79
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 1.0
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 1.0
Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical pr... 27 2.4
AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopam... 27 2.4
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 26 3.2
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 26 3.2
Z46267-16|CAO78720.1| 576|Caenorhabditis elegans Hypothetical p... 26 4.2
Z46267-4|CAD45594.1| 517|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z46267-3|CAA86421.3| 522|Caenorhabditis elegans Hypothetical pr... 26 4.2
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 26 4.2
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 26 4.2
AL021447-2|CAA16273.2| 807|Caenorhabditis elegans Hypothetical ... 25 5.6
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 25 5.6
Z75714-11|CAB00063.2| 723|Caenorhabditis elegans Hypothetical p... 25 7.4
Z75714-10|CAN99711.1| 721|Caenorhabditis elegans Hypothetical p... 25 7.4
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 25 7.4
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 25 7.4
AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical... 25 7.4
AF106575-11|AAC78166.1| 329|Caenorhabditis elegans Hypothetical... 25 9.7
>AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 20 protein.
Length = 180
Score = 74.1 bits (174), Expect = 1e-14
Identities = 35/69 (50%), Positives = 45/69 (65%)
Frame = +1
Query: 16 QGYRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFHNSTIRFPLPKRVHHYKRLNTF 195
Q YRDMGARHRA+A I I+KV+ +KA +K FH++ IRFPLP RV K L+ F
Sbjct: 111 QCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVF 170
Query: 196 AYKRPSTYF 222
R +T+F
Sbjct: 171 TTARQNTHF 179
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 28.3 bits (60), Expect = 0.79
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 45 QSPSSLNTDHQSGSNQGCCXXXSTGQTVPQQHHQIPIAQTCAP 173
QS + ++ HQS N G +G P HH IPI + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 28.3 bits (60), Expect = 0.79
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 45 QSPSSLNTDHQSGSNQGCCXXXSTGQTVPQQHHQIPIAQTCAP 173
QS + ++ HQS N G +G P HH IPI + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 116 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITINP 259
R SST P+DS C + +TR P +R ++ + H + P
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAP 260
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 116 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITINP 259
R SST P+DS C + +TR P +R ++ + H + P
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAP 260
>Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical
protein K09G1.4b protein.
Length = 840
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 107 AVHRSNSSTTAPSDSHCPNVCTTT 178
A N STT+PS S C TTT
Sbjct: 372 AFFAQNISTTSPSSSSCARTTTTT 395
>AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopamine
receptor longvariant protein.
Length = 840
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 107 AVHRSNSSTTAPSDSHCPNVCTTT 178
A N STT+PS S C TTT
Sbjct: 372 AFFAQNISTTSPSSSSCARTTTTT 395
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 154 LPKRVHHYKRLNTFAYKR 207
LPKRVHH ++ YKR
Sbjct: 148 LPKRVHHLQKERHLVYKR 165
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 154 LPKRVHHYKRLNTFAYKR 207
LPKRVHH ++ YKR
Sbjct: 148 LPKRVHHLQKERHLVYKR 165
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 154 LPKRVHHYKRLNTFAYKR 207
LPKRVHH ++ YKR
Sbjct: 148 LPKRVHHLQKERHLVYKR 165
>Z46267-16|CAO78720.1| 576|Caenorhabditis elegans Hypothetical
protein F49E2.2c protein.
Length = 576
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 267 FLHGFIVM*RTLQLQEVSARPLVREGIKSLVVVHTFGQWESD 142
++HG++ + + Q QEV +P V I + V + T + D
Sbjct: 233 WIHGYVEIGKLFQAQEVIVQPAVGSVIAAPVEIETIPEDHKD 274
>Z46267-4|CAD45594.1| 517|Caenorhabditis elegans Hypothetical
protein F49E2.2b protein.
Length = 517
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 267 FLHGFIVM*RTLQLQEVSARPLVREGIKSLVVVHTFGQWESD 142
++HG++ + + Q QEV +P V I + V + T + D
Sbjct: 179 WIHGYVEIGKLFQAQEVIVQPAVGSVIAAPVEIETIPEDHKD 220
>Z46267-3|CAA86421.3| 522|Caenorhabditis elegans Hypothetical
protein F49E2.2a protein.
Length = 522
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 267 FLHGFIVM*RTLQLQEVSARPLVREGIKSLVVVHTFGQWESD 142
++HG++ + + Q QEV +P V I + V + T + D
Sbjct: 179 WIHGYVEIGKLFQAQEVIVQPAVGSVIAAPVEIETIPEDHKD 220
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 115 QVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYFL*L*CTSHNNKPM 261
++K ++ RFP R+ ++TF Y +P L + C S +KPM
Sbjct: 485 EIKHSIATSTRFPEKFRIPETGEMHTFPYNQPEKGVLCIAC-SGPHKPM 532
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 125 SSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNV 238
++TTAP+ + P+ CTTT P+ T+ T+C+ ++
Sbjct: 82 TTTTAPTTTKAPD-CTTT--TAPTTTKAPDCTTCSQDI 116
>AL021447-2|CAA16273.2| 807|Caenorhabditis elegans Hypothetical
protein F19B2.6 protein.
Length = 807
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +3
Query: 42 TQSPSSLNTDHQSGSNQGCCXXXSTGQTVPQQHHQIPIAQTCAP 173
+Q +S N D+ +G +GCC + P +H C P
Sbjct: 387 SQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHPPQAQSNCYP 429
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 131 TTAPSDSHCPNVCTTTRDLIPSRTRGLA 214
+T P CP C TT IP+ T G A
Sbjct: 388 STCPPVVTCPASCITTTTEIPTTTDGAA 415
>Z75714-11|CAB00063.2| 723|Caenorhabditis elegans Hypothetical
protein ZC434.6b protein.
Length = 723
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 107 AVHRSNSSTTAPSDSHCPNVCT 172
++H + ST A D+ CPN +
Sbjct: 119 SIHPGDESTAASHDAECPNAAS 140
>Z75714-10|CAN99711.1| 721|Caenorhabditis elegans Hypothetical
protein ZC434.6a protein.
Length = 721
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 107 AVHRSNSSTTAPSDSHCPNVCT 172
++H + ST A D+ CPN +
Sbjct: 119 SIHPGDESTAASHDAECPNAAS 140
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 44 TEPELTQYRSSKWK*SRLLXVAVHRSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTS 223
T P T++ S R + V + SSTT+ + + + TTT +PS T + + S
Sbjct: 534 TSPFATRFVFSTRVTFRPVSSTVVSTKSSTTSSTTTKPTTLSTTTTTQVPSTTTSVTVPS 593
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 182 DLIPSRTRGLALTSCNCNVRHITINPCKK 268
D + TRG LT H+T+ C+K
Sbjct: 102 DAVVDWTRGAKLTLSQSKTVHVTVGRCRK 130
>AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical
protein Y39G10AR.5 protein.
Length = 917
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 115 QVKQFHNSTIRFPLPKRVHH-YKRLNTF 195
Q+KQFHN T ++ + K + H + + TF
Sbjct: 527 QLKQFHNDTKQYDVVKCLRHAIEAIETF 554
>AF106575-11|AAC78166.1| 329|Caenorhabditis elegans Hypothetical
protein K04F1.7 protein.
Length = 329
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 146 DSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIN 256
DSHC + C + + S+T+ T C+ ++ I+
Sbjct: 39 DSHCESRCNFLEEHLNSKTKASFPTGCSTVCANLLID 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,949,899
Number of Sequences: 27780
Number of extensions: 106784
Number of successful extensions: 290
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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