Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060363.seq
         (268 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   2.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   2.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   2.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   2.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   2.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   2.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   2.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   3.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   8.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   8.0  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   RHESNQGYRDMGARHRARAHS 63
           RHE    YR+ G R  +R  S
Sbjct: 238 RHEDRNSYRNDGERSCSRDRS 258


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   RHESNQGYRDMGARHRARAHS 63
           RHE    YR+ G R  +R  S
Sbjct: 238 RHEDRNSYRNDGERSCSRDRS 258


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   RHESNQGYRDMGARHRARAHS 63
           RHE    YR+ G R  +R  S
Sbjct: 238 RHEDRNSYRNDGERSCSRDRS 258


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   RHESNQGYRDMGARHRARAHS 63
           RHE    YR+ G R  +R  S
Sbjct: 238 RHEDRNSYRNDGERSCSRDRS 258


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   RHESNQGYRDMGARHRARAHS 63
           RHE    YR+ G R  +R  S
Sbjct: 238 RHEDRNSYRNDGERSCSRDRS 258


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   RHESNQGYRDMGARHRARAHS 63
           RHE    YR+ G R  +R  S
Sbjct: 238 RHEDGNSYRNDGERSCSRDRS 258


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   RHESNQGYRDMGARHRARAHS 63
           RHE    YR+ G R  +R  S
Sbjct: 238 RHEDRNSYRNDGERSCSRDRS 258


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   RHESNQGYRDMGARHRARAHS 63
           RHE    YR+ G R  +R  S
Sbjct: 238 RHEDRNSYRNDGERSCSRDRS 258


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 82  EVIKAAA--CXXPQVKQFHNSTIRFPLPKRV 168
           ++ KAAA      +++  H+S+   PLP RV
Sbjct: 201 KLAKAAASKAALAKLRNVHSSSFCIPLPVRV 231


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 11  VIKAIEIWELD 43
           VIK +++W++D
Sbjct: 140 VIKPLQLWDVD 150


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 51  PSSLNTDHQSGSNQGC 98
           PSSLN   +   N GC
Sbjct: 91  PSSLNVISEKIGNGGC 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,984
Number of Sequences: 438
Number of extensions: 1198
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)