Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060363.seq
         (268 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW     54   2e-08
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)          53   3e-08
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...    52   7e-08
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   0.42 
At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase...    27   1.7  
At2g43870.1 68415.m05454 polygalacturonase, putative / pectinase...    27   2.2  
At5g06710.1 68418.m00758 homeobox-leucine zipper protein 14 (HAT...    26   3.9  
At3g14910.1 68416.m01885 expressed protein                             26   3.9  
At2g42940.1 68415.m05322 DNA-binding family protein contains a A...    26   3.9  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    25   6.9  
At4g02550.1 68417.m00348 expressed protein                             25   6.9  

>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +1

Query: 16  QGYRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFHNSTIRFPL 156
           Q Y +M +RHR R   IQIIK   + A+ C     KQFHNS I+FPL
Sbjct: 107 QMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHNSKIKFPL 153


>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 24/47 (51%), Positives = 28/47 (59%)
 Frame = +1

Query: 16  QGYRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFHNSTIRFPL 156
           Q Y +M +RHR R   IQIIK   + A  C     KQFHNS I+FPL
Sbjct: 107 QMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPL 153


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score = 51.6 bits (118), Expect = 7e-08
 Identities = 24/47 (51%), Positives = 28/47 (59%)
 Frame = +1

Query: 16  QGYRDMGARHRARAHSIQIIKVEVIKAAACXXPQVKQFHNSTIRFPL 156
           Q Y +M +RHR R   IQIIK   + A  C     KQFHNS I+FPL
Sbjct: 107 QMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPL 153


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 118 VKQFHNSTIRFPLPKRVHHYK 180
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


>At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 397

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 152 HCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITINPCK 265
           +CP   TT R +  +  +   + S N  + HI IN C+
Sbjct: 146 NCPEGATTLRFMDSNNVKIKGVLSLNSQLFHIAINRCR 183


>At2g43870.1 68415.m05454 polygalacturonase, putative / pectinase,
           putative similar to SP|P48979 Polygalacturonase
           precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
           persica}; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 384

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 143 SDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITINPC 262
           S  +CP+  TT      S      LTS N  + H+ IN C
Sbjct: 132 SGKNCPSGATTIGFQSSSNVVVSGLTSLNSQMFHVVINGC 171


>At5g06710.1 68418.m00758 homeobox-leucine zipper protein 14 (HAT14)
           / HD-ZIP protein 14 contains similarity to homeodomain
           leucine zipper protein
          Length = 336

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 116 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTR 205
           R  +S   PS S   N+C +T  LIP + R
Sbjct: 301 RVATSAAQPSTSAAHNLCLSTSSLIPVKPR 330


>At3g14910.1 68416.m01885 expressed protein
          Length = 455

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 23  IEIWELDTEPELTQYRSSKWK*SRLLXVAVHRSNSSTTAP 142
           IE+W++ T P L   + +K   S+LL  A    ++S+++P
Sbjct: 394 IEVWQMRTGPRLLTIQCAKG--SKLLQPAYRFGSNSSSSP 431


>At2g42940.1 68415.m05322 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 257

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 104 VAVHRSNSSTTAPS---DSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITI 253
           +  H S +S  A +    S C ++C T  D    + RGL + S N  V ++T+
Sbjct: 71  IVTHDSPNSLRANAVEISSGC-DICETLSDFARRKQRGLCILSANGCVTNVTL 122


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
            low similarity to nuclear matrix constituent protein 1
            (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 111  STGQTVPQQHHQIPIAQTCAP 173
            S+ Q VP+  H++P +QT  P
Sbjct: 944  SSPQNVPEDKHELPSSQTQTP 964


>At4g02550.1 68417.m00348 expressed protein
          Length = 307

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 82  EVIKAAACXXPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 219
           +V K ++     VKQF   ++ FPL     H     T +Y   S Y
Sbjct: 152 KVKKESSHHLNDVKQFEEDSVSFPLGSSEEHSDTDGTESYAGASEY 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,599,838
Number of Sequences: 28952
Number of extensions: 96009
Number of successful extensions: 245
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)