Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060362.seq
         (497 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   1.5  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   2.7  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   2.7  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   2.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   4.7  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   8.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   8.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.1  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   8.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   8.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.1  

>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 178 GTRREEHHLLRNRP 137
           G R+  HHL++N+P
Sbjct: 82  GVRKVLHHLIKNKP 95


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 178 GTRREEHHLLRNRP 137
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 178 GTRREEHHLLRNRP 137
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 275 PDPQIPHRTRNRH 313
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 344 MPNLLHVIPVSDDSVFD 294
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 344 MPNLLHVIPVSDDSVFD 294
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 344 MPNLLHVIPVSDDSVFD 294
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 344 MPNLLHVIPVSDDSVFD 294
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 280 VRIPLLLCAHLLHKSPSVPYRPSRPDG 200
           +++P    AH    SP++P+  +R DG
Sbjct: 117 MQLPHPAAAHSALLSPAMPHNLTRHDG 143


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 180 LDRGKAPPSGRD 215
           LDRGK  P G++
Sbjct: 49  LDRGKCSPDGQE 60


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 121 APPRSTPPLST--PSNSNATK 139


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 121 APPRSTPPLST--PSNSNATK 139


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 121 APPRSTPPLST--PSNSNATK 139


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 180 LDRGKAPPSGRD 215
           LDRGK  P G++
Sbjct: 49  LDRGKCSPDGQE 60


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 121 APPRSTPPLST--PSNSNATK 139


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 121 APPRSTPPLST--PSNSNATK 139


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 77  APPRSTPPLST--PSNSNATK 95


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 121 APPRSTPPLST--PSNSNATK 139


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 121 APPRSTPPLST--PSNSNATK 139


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 SPPRNTPVLLTEAPLNPKANR 432
           +PPR+TP L T  P N  A +
Sbjct: 121 APPRSTPPLST--PSNSNATK 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,781
Number of Sequences: 336
Number of extensions: 2692
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)