Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060362.seq
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 154 8e-39
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 81 1e-16
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 69 4e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 9e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 4e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 43 2e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 40 2e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.22
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.39
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.1
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 2.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.6
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 154 bits (373), Expect = 8e-39
Identities = 77/130 (59%), Positives = 86/130 (66%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDE ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 268 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKXTQ 447
+ P P LLTEAPLNPK+NR K TQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 448 IMFETFNTPA 477
I+FETFN PA
Sbjct: 122 IIFETFNAPA 131
Score = 101 bits (242), Expect = 6e-23
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
AQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 58 AQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEH 101
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 80.6 bits (190), Expect = 1e-16
Identities = 45/126 (35%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAKXXXXXX 285
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG E +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 286 XXXXXXXXXLTGMTWRR-FGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKXTQIMFET 462
+ I S + P P+LLTE PL N+ K + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 463 FNTPAM 480
N PA+
Sbjct: 132 LNVPAL 137
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 386
AQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEH
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 68.9 bits (161), Expect = 4e-13
Identities = 45/126 (35%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEHRAK 267
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDE A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 268 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKXTQ 447
+ PR +LLTE P+NP ANR K +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 448 IMFETF 465
MFE +
Sbjct: 122 TMFERY 127
Score = 48.0 bits (109), Expect = 8e-07
Identities = 15/41 (36%), Positives = 33/41 (80%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 377
A++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.4 bits (125), Expect = 9e-09
Identities = 37/129 (28%), Positives = 57/129 (44%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAKX 270
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPGME 64
Query: 271 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKXTQI 450
+T W R+G+ + P P+L+TE NP NR K +
Sbjct: 65 IKNAIRNGWVENWDVTVDLW-RYGL---EQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 451 MFETFNTPA 477
MFE+ PA
Sbjct: 121 MFESLRCPA 129
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.8 bits (111), Expect = 4e-07
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 279 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
+L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 255
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 38.3 bits (85), Expect = 6e-04
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 376 PRNTPVLLTEAPLNPKANRXKXTQIMFETFN 468
P + LLTE PLNP NR +IMFE+FN
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFN 151
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 43.2 bits (97), Expect = 2e-05
Identities = 28/125 (22%), Positives = 55/125 (44%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAKXXXXXX 285
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ +
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 286 XXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKXTQIMFETF 465
++ + + + P+ +TE NP R T+++FE +
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFLKLGIDRMEHPICMTEPLANPTYVRSTMTELLFELY 142
Query: 466 NTPAM 480
N P++
Sbjct: 143 NAPSV 147
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
P E +++NWD ME++ +TF +L + EH
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 40.3 bits (90), Expect = 2e-04
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAKX 270
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE +
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 271 XXXXXXXXXXXXXXL------TGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANR 432
+ T TW R G+ V+P +++TE NP++ R
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWER-GLKEKLQ--VNPTEYA-MMITEPSWNPQSVR 117
Query: 433 XKXTQIMFETFNTPA 477
+ + FE + PA
Sbjct: 118 QQIMEAAFEQLHVPA 132
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.22
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 248 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 87
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.1 bits (62), Expect = 0.39
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -1
Query: 323 IPVSDDSVFDGVFEGQDTSFALCSSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 144
+P + +V +TSFAL ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 143 PALHIP 126
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 250 LLHKSPSVPYRPSRPDGGAFPRSRGTR 170
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 251 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 135
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHT 389
PI+ G V +W+ ++ W H Y+ L P + T
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTT 144
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 151 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 133 TYRSHCLLPTRQLLRRTS*ISEI 65
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAG 153
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,964
Number of Sequences: 5004
Number of extensions: 44731
Number of successful extensions: 153
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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