Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060362.seq
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 170 6e-43
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 1e-41
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 1e-41
SB_56| Best HMM Match : Actin (HMM E-Value=0) 164 4e-41
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 1e-40
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 3e-28
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 52 3e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 5e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 44 5e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 36 0.019
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.40
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 30 1.2
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.2
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.2
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 29 1.6
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 29 1.6
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 29 1.6
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 2.1
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 29 2.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 27 8.6
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 8.6
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 8.6
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 27 8.6
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 27 8.6
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 27 8.6
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 8.6
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 8.6
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 170 bits (413), Expect = 6e-43
Identities = 86/133 (64%), Positives = 92/133 (69%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKX 441
+K + P PVLLTEAPLNPKANR K
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 442 TQIMFETFNTPAM 480
TQIMFETFN+PAM
Sbjct: 121 TQIMFETFNSPAM 133
Score = 103 bits (247), Expect = 8e-23
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 165 bits (402), Expect = 1e-41
Identities = 85/133 (63%), Positives = 91/133 (68%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKX 441
+K + P PVLLTEAPLNPKANR K
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 442 TQIMFETFNTPAM 480
TQIMFETFN+PAM
Sbjct: 121 TQIMFETFNSPAM 133
Score = 103 bits (247), Expect = 8e-23
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 165 bits (402), Expect = 1e-41
Identities = 83/133 (62%), Positives = 91/133 (68%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKX 441
+K + P PVLLTEAPLNPKANR K
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 442 TQIMFETFNTPAM 480
TQIMFETFN+PAM
Sbjct: 121 TQIMFETFNSPAM 133
Score = 103 bits (247), Expect = 8e-23
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 164 bits (398), Expect = 4e-41
Identities = 84/131 (64%), Positives = 90/131 (68%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 268 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKXTQ 447
+ P PVLLTEAPLNPKANR K TQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 448 IMFETFNTPAM 480
IMFETFN+PAM
Sbjct: 122 IMFETFNSPAM 132
Score = 103 bits (247), Expect = 8e-23
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 101
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 163 bits (395), Expect = 1e-40
Identities = 83/131 (63%), Positives = 90/131 (68%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 268 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXKXTQ 447
+ P PVLLTEAPLNPKANR K TQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 448 IMFETFNTPAM 480
IMFETFN+PAM
Sbjct: 122 IMFETFNSPAM 132
Score = 103 bits (247), Expect = 8e-23
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 101
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 121 bits (292), Expect = 3e-28
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 67.7 bits (158), Expect = 5e-12
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 353
AQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Frame = +1
Query: 100 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE-----H 258
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDE +
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 259 RAKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPVLLTEAPLNPKANRXK 438
+ + + FG S M+ PRNT VLLTE PLNP NR K
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFG--ESKMNI--DPRNTKVLLTEPPLNPMKNREK 122
Query: 439 XTQIMFETF 465
++MFE +
Sbjct: 123 MIEVMFENY 131
Score = 44.4 bits (100), Expect = 5e-05
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 353
A R +L + YP+++GIV NWDDM+ +W +TF
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTF 93
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 388 PVLLTEAPLNPKANRXKXTQIMFETFNTPAM 480
PVLLTEAPLNPK NR + Q+MFE+FN P M
Sbjct: 2147 PVLLTEAPLNPKMNRERMVQLMFESFNVPCM 2177
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 51.6 bits (118), Expect = 3e-07
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +1
Query: 388 PVLLTEAPLNPKANRXKXTQIMFETFNTPAM 480
PVLLTEAPLNP+ NR K ++ FETFN PA+
Sbjct: 128 PVLLTEAPLNPRRNREKAAEVFFETFNVPAL 158
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 76 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 222
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 44.4 bits (100), Expect = 5e-05
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 285 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
K+PI H IV +WD ME+ W + LR PE+H
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 204 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 88
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 35.9 bits (79), Expect = 0.019
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 388 PVLLTEAPLNPKANRXKXTQIMFETFNTPA 477
P+L++EA N + R K T++MFE +N PA
Sbjct: 35 PLLMSEAAWNTRIKREKLTELMFEKYNVPA 64
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.92
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 174 VPLDRGKAPPSGRDGRYGTEGLLCRR*AQSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 347
V L + +GR+ G+ +CR+ K ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRK----KAPLITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 348 TFYN 359
T N
Sbjct: 497 TCPN 500
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
V+LSH + H M D +HG RS SCET L T
Sbjct: 224 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNE 362
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAV 174
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
V+LSH + H M D +HG RS SCET L T
Sbjct: 419 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
V+LSH + H M D +HG RS SCET L T
Sbjct: 282 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
V+LSH + H M D +HG RS SCET L T
Sbjct: 260 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
V+LSH + H M D +HG RS SCET L T
Sbjct: 136 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H M D +HG RS SCET L T
Sbjct: 184 IVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -2
Query: 388 VCSSGATRSSL*KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCAH--LLHKSPSVPYRP 215
+CS + + C + ++V CS + V + ++C+ + H+ P
Sbjct: 87 MCSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSP 146
Query: 214 SRPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 119
SR D FP + R HH+L + + R+H
Sbjct: 147 SRADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 313 VTIPCSMGYLRVRIPLLLCAHLLHKSPSVP 224
V PC M LRVR+ C +LH + P
Sbjct: 60 VACPCCMSLLRVRVVCPCCMSVLHVRVACP 89
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 194 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 84
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 303 GIVTNWDDMEKIWHHTFYNEL-RVAPEEHTR 392
G+ +W D IWH+ N L V E+HTR
Sbjct: 238 GMARDWPDARGIWHNDSKNFLIWVNEEDHTR 268
>SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 404 SVSRTGVFLGGDTQLIVEGMMPNL 333
+V TGVFL D L +E M P L
Sbjct: 450 NVDNTGVFLQADISLTIEPMFPQL 473
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 250 LLHKSPSVPYRPS--RPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 104
LL +S P +P+ RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H L A +HG R +SCET L T
Sbjct: 253 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 303 GIVTNWDDMEKIWHHTFYNEL-RVAPEEHTR 392
G+ +W D IWH+ N L V E+HTR
Sbjct: 579 GMARDWPDARGIWHNKNKNFLVWVNEEDHTR 609
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 100 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 204
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 303 GIVTNWDDMEKIWHHTFYNEL-RVAPEEHTR 392
G+ +W D IWH+ N L V E+HTR
Sbjct: 2498 GMARDWPDARGIWHNENKNFLVWVNEEDHTR 2528
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H L A +HG R +SCET L T
Sbjct: 114 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H L A +HG R +SCET L T
Sbjct: 1652 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H L A +HG R +SCET L T
Sbjct: 680 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H L A +HG R +SCET L T
Sbjct: 235 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H L A +HG R +SCET L T
Sbjct: 1090 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H L A +HG R +SCET L T
Sbjct: 33 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 325 SSQLVTI--PCSMGYLRV-RIPLLLCAHLLHKSPSVPYRP 215
S LV++ P S Y + RIP LC L PS PY+P
Sbjct: 260 SPSLVSLQAPLSYSYKPLPRIPSSLCLLSLQAPPSYPYKP 299
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 237 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
++LSH + H L A +HG R +SCET L T
Sbjct: 114 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,315,455
Number of Sequences: 59808
Number of extensions: 399969
Number of successful extensions: 1148
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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