Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060361.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    28   1.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   7.7  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.7  

>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 605 FLHLFIRRWAVSKLFPKLLNSSEDFPDKSN 516
           FL  FI R + + +F  ++ SSE+ PDK N
Sbjct: 12  FLFCFIIRISCTGVFESVIKSSENVPDKVN 41


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 92  QFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 238
           +  +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 480 PCILSCHRTGARVGFVREVFTGVEQLRKEFANC-PPSNEQMQKL 608
           P I +    G    + R +F  VEQL+    NC  PSN   + L
Sbjct: 652 PDICAFPNAGLNSIYARNLFNTVEQLQSVLPNCHVPSNLSTESL 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,270
Number of Sequences: 5004
Number of extensions: 47606
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)