Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060361.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663...    31   0.64 
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174...    30   2.0  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    29   4.5  
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741...    29   4.5  
10_08_1032 - 22432739-22433218,22433231-22433848                       28   7.9  
04_03_0835 + 20178224-20179483                                         28   7.9  

>12_02_0871 +
           23865343-23866016,23866122-23866170,23866276-23866356,
           23866599-23866718,23866957-23867055,23867135-23867194,
           23867316-23867410,23867483-23867508,23869212-23869285,
           23870194-23870259,23871027-23871099,23871585-23871622,
           23873758-23873871,23876079-23876195,23876288-23876368,
           23876468-23876536,23876631-23876669,23876809-23876973,
           23877380-23877484,23877569-23877637,23877754-23877816,
           23877903-23878021,23878124-23878348,23878409-23878610
          Length = 940

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +2

Query: 65  CL*IINKRIQFEK-GI-KMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIED- 235
           C  I++ RI  ++ GI K+QG  + +D+SL+   L      K  G E  EE   K +ED 
Sbjct: 431 CGEIVDLRIMKDQNGISKLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELIRKALEDV 490

Query: 236 ---DLHKIVGFVMLVSKSRVNR 292
              DL         V K R+NR
Sbjct: 491 VSVDLAMARNHDSSVGKRRLNR 512


>11_06_0766 -
           27115441-27115760,27115878-27116025,27116213-27117417,
           27117510-27117753,27120181-27120357
          Length = 697

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 271 NKHHKPNDLMQIILNALRXXXX*NLGAKALKISSQFECLIFQGYVHKHSWPLHF 110
           NKH  PND+M ++L +       +L ++ ++ + +   L     VH  S  LHF
Sbjct: 333 NKHENPNDIMALLLASKICSEERHLASEGVEYARRAIKLSESSDVHLKSVGLHF 386


>07_03_1479 -
           26832976-26833095,26833737-26833943,26834104-26834252,
           26834330-26834732,26834840-26835118,26835285-26835716,
           26836362-26836838,26837171-26837212,26837285-26837545,
           26837637-26838938,26839146-26839575,26839643-26840046,
           26840360-26840716,26840842-26841102,26841494-26842141,
           26842231-26842452,26842547-26842768,26842860-26843009,
           26843739-26844111,26844467-26844689,26845167-26845425,
           26845585-26845920,26846013-26846999,26848395-26849624,
           26849706-26849768,26849858-26849910,26849998-26850079,
           26850520-26850588,26851070-26851129,26851205-26851267,
           26851993-26852101,26852742-26852827,26853120-26853847,
           26854613-26854676
          Length = 3716

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 167 LRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVM-LVSKSRVNRISKPF 307
           LR YF++  A +S   +P+G E+  HK+   V+ ++++   + + +PF
Sbjct: 49  LRCYFRAFSAILSNFTAPQGTENAEHKLRNVVIEILNRLPHSEVLRPF 96


>03_06_0116 +
           31773295-31773603,31773800-31773946,31774080-31774158,
           31777558-31778180
          Length = 385

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 370 AFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVY 489
           AFS+R  K   PK   + L   W L+ +  P   +R H+Y
Sbjct: 227 AFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIY 266


>10_08_1032 - 22432739-22433218,22433231-22433848
          Length = 365

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 498 HRTGARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYR 614
           HR  +++ F  +V T  + + K      P N  MQ+ YR
Sbjct: 126 HRIVSKLRFCNQVVTDEDMIEKTLDTFHPKNSMMQEQYR 164


>04_03_0835 + 20178224-20179483
          Length = 419

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 224 GIEDDLHKIVGFVMLVSKSRVNRISKPF*T 313
           GI+DD   +  FVML  +  V R  +PF T
Sbjct: 275 GIQDDCGNVTRFVMLAREPIVPRTDRPFKT 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,473,541
Number of Sequences: 37544
Number of extensions: 282115
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)