Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060361.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    28   6.1  
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)                       28   8.1  

>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 342 WYRNHNRDNTVQNGFDIRFTRLFETSITNP 253
           WY    R N V+NGFDI     +  ++T+P
Sbjct: 72  WY-GRRRQNCVRNGFDITVLTRYSEAVTHP 100


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 338 IETIIETILFRMASISDSLGSLKQASQTQRSYADHPQC 225
           I TII  I+  M  IS S  S   +S +Q S+  HP C
Sbjct: 80  IITIISVIITIMTIISSSSSSPPLSSSSQSSHRYHPLC 117


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 271  FKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYN 450
            FKE  ++ I ++   IV + V +  E+G  L     + +            + S  RL+ 
Sbjct: 1307 FKESGKASIPSVNREIVRVWVDLCSEKGVPLEREAEEMIRLLDESLKHRSRIDSTMRLWM 1366

Query: 451  NLEPNSPLRYHV 486
             + P+ P+  HV
Sbjct: 1367 KIAPHVPVEIHV 1378


>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 351

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 460 PNSPLRYHVYYHVIE 504
           P+ PL YH +YHVI+
Sbjct: 288 PDDPLDYHFFYHVID 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,056
Number of Sequences: 59808
Number of extensions: 341723
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)