Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060361.seq
(685 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF064603-1|AAC17108.1| 374|Homo sapiens GA17 protein protein. 62 2e-09
CR450300-1|CAG29296.1| 374|Homo sapiens GA17 protein. 59 1e-08
BC051292-1|AAH51292.1| 374|Homo sapiens eukaryotic translation ... 59 1e-08
BC019103-1|AAH19103.1| 374|Homo sapiens PCI domain containing 1... 59 1e-08
AY769947-1|AAX12524.1| 374|Homo sapiens fetal lung protein B5 p... 59 1e-08
AK222564-1|BAD96284.1| 374|Homo sapiens dendritic cell protein ... 59 1e-08
DQ185042-1|ABD14422.1| 136|Homo sapiens dendritic cell protein ... 56 2e-07
M28826-1|AAA51939.1| 333|Homo sapiens CD1B protein. 31 3.8
M22173-1|AAA51940.1| 333|Homo sapiens thymocyte antigen protein. 31 3.8
BC104217-1|AAI04218.1| 333|Homo sapiens CD1b molecule protein. 31 3.8
BC104216-1|AAI04217.1| 333|Homo sapiens CD1b molecule protein. 31 3.8
BC074747-1|AAH74747.1| 333|Homo sapiens CD1b molecule protein. 31 3.8
BC069481-1|AAH69481.1| 333|Homo sapiens CD1b molecule protein. 31 3.8
AL121986-6|CAI10853.1| 333|Homo sapiens CD1b molecule protein. 31 3.8
AL121986-5|CAI10852.1| 245|Homo sapiens CD1b molecule protein. 31 3.8
>AF064603-1|AAC17108.1| 374|Homo sapiens GA17 protein protein.
Length = 374
Score = 62.1 bits (144), Expect = 2e-09
Identities = 29/84 (34%), Positives = 54/84 (64%)
Frame = +1
Query: 259 CDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLW 438
CD C KE + D+E+++NS+VS+++ + ++ E LI + ++L K + + LQ L
Sbjct: 49 CDVCLKE-DDKDVESVVNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLS 107
Query: 439 RLYNNLEPNSPLRYHVYYHVIELV 510
L++ ++ N+P+RY VY +IE+V
Sbjct: 108 NLFHGMDKNTPVRYTVYCSLIEVV 131
Score = 56.0 bits (129), Expect = 1e-07
Identities = 37/81 (45%), Positives = 46/81 (56%)
Frame = +2
Query: 113 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNR 292
M PA F+DIS EDQA ELR Y KS GAEISEE S G+ DL +I+ + K
Sbjct: 1 MSVPA-FIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKD 59
Query: 293 ISKPF*TVLSLLWFLYH*KEE 355
+ +V+SLL L K+E
Sbjct: 60 VESVVNSVVSLLLILEPDKQE 80
Score = 36.7 bits (81), Expect = 0.077
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 510 ARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHXVLKX-QNSELAAKVMIELLG 683
A G ++ + T ++Q+RK ++ + E+ L RLL+ L + S+ A+KVM+ELLG
Sbjct: 132 ASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALADCKKSDAASKVMVELLG 190
>CR450300-1|CAG29296.1| 374|Homo sapiens GA17 protein.
Length = 374
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/83 (32%), Positives = 53/83 (63%)
Frame = +1
Query: 259 CDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLW 438
CD C KE + D+E+++NS+VS+++ + ++ E LI + ++L K + + LQ L
Sbjct: 49 CDVCLKE-DDKDVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLS 107
Query: 439 RLYNNLEPNSPLRYHVYYHVIEL 507
L++ ++ N+P+RY VY +I++
Sbjct: 108 NLFHGMDKNTPVRYTVYCSLIKV 130
Score = 56.4 bits (130), Expect = 9e-08
Identities = 37/81 (45%), Positives = 46/81 (56%)
Frame = +2
Query: 113 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNR 292
M PA F+DIS EDQA ELR Y KS GAEISEE S G+ DL +I+ + K
Sbjct: 1 MSVPA-FIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKD 59
Query: 293 ISKPF*TVLSLLWFLYH*KEE 355
+ +V+SLL L K+E
Sbjct: 60 VESVMNSVVSLLLILEPDKQE 80
Score = 38.3 bits (85), Expect = 0.025
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 468 PSKIPCILSCHRTGARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHXVL-KXQN 644
P + S + A G ++ + T ++Q+RK ++ + E+ L RLL+ L +
Sbjct: 118 PVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKK 177
Query: 645 SELAAKVMIELLG 683
S+ A+KVM+ELLG
Sbjct: 178 SDAASKVMVELLG 190
>BC051292-1|AAH51292.1| 374|Homo sapiens eukaryotic translation
initiation factor 3, subunit M protein.
Length = 374
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/83 (32%), Positives = 53/83 (63%)
Frame = +1
Query: 259 CDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLW 438
CD C KE + D+E+++NS+VS+++ + ++ E LI + ++L K + + LQ L
Sbjct: 49 CDVCLKE-DDKDVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLS 107
Query: 439 RLYNNLEPNSPLRYHVYYHVIEL 507
L++ ++ N+P+RY VY +I++
Sbjct: 108 NLFHGMDKNTPVRYTVYCSLIKV 130
Score = 56.4 bits (130), Expect = 9e-08
Identities = 37/81 (45%), Positives = 46/81 (56%)
Frame = +2
Query: 113 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNR 292
M PA F+DIS EDQA ELR Y KS GAEISEE S G+ DL +I+ + K
Sbjct: 1 MSVPA-FIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKD 59
Query: 293 ISKPF*TVLSLLWFLYH*KEE 355
+ +V+SLL L K+E
Sbjct: 60 VESVMNSVVSLLLILEPDKQE 80
Score = 38.3 bits (85), Expect = 0.025
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 468 PSKIPCILSCHRTGARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHXVL-KXQN 644
P + S + A G ++ + T ++Q+RK ++ + E+ L RLL+ L +
Sbjct: 118 PVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKK 177
Query: 645 SELAAKVMIELLG 683
S+ A+KVM+ELLG
Sbjct: 178 SDAASKVMVELLG 190
>BC019103-1|AAH19103.1| 374|Homo sapiens PCI domain containing 1
(herpesvirus entry mediator) protein.
Length = 374
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/83 (32%), Positives = 53/83 (63%)
Frame = +1
Query: 259 CDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLW 438
CD C KE + D+E+++NS+VS+++ + ++ E LI + ++L K + + LQ L
Sbjct: 49 CDVCLKE-DDKDVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLS 107
Query: 439 RLYNNLEPNSPLRYHVYYHVIEL 507
L++ ++ N+P+RY VY +I++
Sbjct: 108 NLFHGMDKNTPVRYTVYCSLIKV 130
Score = 56.4 bits (130), Expect = 9e-08
Identities = 37/81 (45%), Positives = 46/81 (56%)
Frame = +2
Query: 113 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNR 292
M PA F+DIS EDQA ELR Y KS GAEISEE S G+ DL +I+ + K
Sbjct: 1 MSVPA-FIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKD 59
Query: 293 ISKPF*TVLSLLWFLYH*KEE 355
+ +V+SLL L K+E
Sbjct: 60 VESVMNSVVSLLLILEPDKQE 80
Score = 38.3 bits (85), Expect = 0.025
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 468 PSKIPCILSCHRTGARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHXVL-KXQN 644
P + S + A G ++ + T ++Q+RK ++ + E+ L RLL+ L +
Sbjct: 118 PVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKK 177
Query: 645 SELAAKVMIELLG 683
S+ A+KVM+ELLG
Sbjct: 178 SDAASKVMVELLG 190
>AY769947-1|AAX12524.1| 374|Homo sapiens fetal lung protein B5
protein.
Length = 374
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/83 (32%), Positives = 53/83 (63%)
Frame = +1
Query: 259 CDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLW 438
CD C KE + D+E+++NS+VS+++ + ++ E LI + ++L K + + LQ L
Sbjct: 49 CDVCLKE-DDKDVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLS 107
Query: 439 RLYNNLEPNSPLRYHVYYHVIEL 507
L++ ++ N+P+RY VY +I++
Sbjct: 108 NLFHGMDKNTPVRYTVYCSLIKV 130
Score = 56.4 bits (130), Expect = 9e-08
Identities = 37/81 (45%), Positives = 46/81 (56%)
Frame = +2
Query: 113 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNR 292
M PA F+DIS EDQA ELR Y KS GAEISEE S G+ DL +I+ + K
Sbjct: 1 MSVPA-FIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKD 59
Query: 293 ISKPF*TVLSLLWFLYH*KEE 355
+ +V+SLL L K+E
Sbjct: 60 VESVMNSVVSLLLILEPDKQE 80
Score = 38.3 bits (85), Expect = 0.025
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 468 PSKIPCILSCHRTGARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHXVL-KXQN 644
P + S + A G ++ + T ++Q+RK ++ + E+ L RLL+ L +
Sbjct: 118 PVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKK 177
Query: 645 SELAAKVMIELLG 683
S+ A+KVM+ELLG
Sbjct: 178 SDAASKVMVELLG 190
>AK222564-1|BAD96284.1| 374|Homo sapiens dendritic cell protein
variant protein.
Length = 374
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/83 (32%), Positives = 53/83 (63%)
Frame = +1
Query: 259 CDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLW 438
CD C KE + D+E+++NS+VS+++ + ++ E LI + ++L K + + LQ L
Sbjct: 49 CDVCLKE-DDKDVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLS 107
Query: 439 RLYNNLEPNSPLRYHVYYHVIEL 507
L++ ++ N+P+RY VY +I++
Sbjct: 108 NLFHGMDKNTPVRYTVYCSLIKV 130
Score = 56.4 bits (130), Expect = 9e-08
Identities = 37/81 (45%), Positives = 46/81 (56%)
Frame = +2
Query: 113 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNR 292
M PA F+DIS EDQA ELR Y KS GAEISEE S G+ DL +I+ + K
Sbjct: 1 MSVPA-FIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKD 59
Query: 293 ISKPF*TVLSLLWFLYH*KEE 355
+ +V+SLL L K+E
Sbjct: 60 VESVMNSVVSLLLILEPDKQE 80
Score = 38.3 bits (85), Expect = 0.025
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 468 PSKIPCILSCHRTGARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHXVL-KXQN 644
P + S + A G ++ + T ++Q+RK ++ + E+ L RLL+ L +
Sbjct: 118 PVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKK 177
Query: 645 SELAAKVMIELLG 683
S+ A+KVM+ELLG
Sbjct: 178 SDAASKVMVELLG 190
>DQ185042-1|ABD14422.1| 136|Homo sapiens dendritic cell protein
GA17 protein.
Length = 136
Score = 55.6 bits (128), Expect = 2e-07
Identities = 34/75 (45%), Positives = 43/75 (57%)
Frame = +2
Query: 131 FMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNRISKPF* 310
F+DIS EDQA ELR Y KS GAEISEE S G+ DL +I+ + K +
Sbjct: 3 FIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDVESVMN 62
Query: 311 TVLSLLWFLYH*KEE 355
+V+SLL L K+E
Sbjct: 63 SVVSLLLILEPDKQE 77
Score = 55.6 bits (128), Expect = 2e-07
Identities = 26/83 (31%), Positives = 52/83 (62%)
Frame = +1
Query: 259 CDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLW 438
CD C KE + D+E+++NS+VS+++ + ++ E LI + ++L K + + LQ L
Sbjct: 46 CDVCLKE-DDKDVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLS 104
Query: 439 RLYNNLEPNSPLRYHVYYHVIEL 507
L++ ++ N+P+R VY +I++
Sbjct: 105 NLFHGMDKNTPVRCTVYCSLIKV 127
>M28826-1|AAA51939.1| 333|Homo sapiens CD1B protein.
Length = 333
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 417 GSSAIVMETLQQLRTQLPSKIPCILSC--HRTGARVGFVREVFTGVEQLRKEFANCPPSN 590
G + V + + + P +I I C H GA V F+R G++ L + A+C PS
Sbjct: 94 GFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 153
Query: 591 EQMQKLYRLLHXVLKXQNSELAAKVMI 671
E + + +++ Q ++++
Sbjct: 154 EGGSRAQKFCALIIQYQGIMETVRILL 180
>M22173-1|AAA51940.1| 333|Homo sapiens thymocyte antigen protein.
Length = 333
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 417 GSSAIVMETLQQLRTQLPSKIPCILSC--HRTGARVGFVREVFTGVEQLRKEFANCPPSN 590
G + V + + + P +I I C H GA V F+R G++ L + A+C PS
Sbjct: 94 GFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 153
Query: 591 EQMQKLYRLLHXVLKXQNSELAAKVMI 671
E + + +++ Q ++++
Sbjct: 154 EGGSRAQKFCALIIQYQGIMETVRILL 180
>BC104217-1|AAI04218.1| 333|Homo sapiens CD1b molecule protein.
Length = 333
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 417 GSSAIVMETLQQLRTQLPSKIPCILSC--HRTGARVGFVREVFTGVEQLRKEFANCPPSN 590
G + V + + + P +I I C H GA V F+R G++ L + A+C PS
Sbjct: 94 GFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 153
Query: 591 EQMQKLYRLLHXVLKXQNSELAAKVMI 671
E + + +++ Q ++++
Sbjct: 154 EGGSRAQKFCALIIQYQGIMETVRILL 180
>BC104216-1|AAI04217.1| 333|Homo sapiens CD1b molecule protein.
Length = 333
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 417 GSSAIVMETLQQLRTQLPSKIPCILSC--HRTGARVGFVREVFTGVEQLRKEFANCPPSN 590
G + V + + + P +I I C H GA V F+R G++ L + A+C PS
Sbjct: 94 GFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 153
Query: 591 EQMQKLYRLLHXVLKXQNSELAAKVMI 671
E + + +++ Q ++++
Sbjct: 154 EGGSRAQKFCALIIQYQGIMETVRILL 180
>BC074747-1|AAH74747.1| 333|Homo sapiens CD1b molecule protein.
Length = 333
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 417 GSSAIVMETLQQLRTQLPSKIPCILSC--HRTGARVGFVREVFTGVEQLRKEFANCPPSN 590
G + V + + + P +I I C H GA V F+R G++ L + A+C PS
Sbjct: 94 GFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 153
Query: 591 EQMQKLYRLLHXVLKXQNSELAAKVMI 671
E + + +++ Q ++++
Sbjct: 154 EGGSRAQKFCALIIQYQGIMETVRILL 180
>BC069481-1|AAH69481.1| 333|Homo sapiens CD1b molecule protein.
Length = 333
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 417 GSSAIVMETLQQLRTQLPSKIPCILSC--HRTGARVGFVREVFTGVEQLRKEFANCPPSN 590
G + V + + + P +I I C H GA V F+R G++ L + A+C PS
Sbjct: 94 GFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 153
Query: 591 EQMQKLYRLLHXVLKXQNSELAAKVMI 671
E + + +++ Q ++++
Sbjct: 154 EGGSRAQKFCALIIQYQGIMETVRILL 180
>AL121986-6|CAI10853.1| 333|Homo sapiens CD1b molecule protein.
Length = 333
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 417 GSSAIVMETLQQLRTQLPSKIPCILSC--HRTGARVGFVREVFTGVEQLRKEFANCPPSN 590
G + V + + + P +I I C H GA V F+R G++ L + A+C PS
Sbjct: 94 GFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 153
Query: 591 EQMQKLYRLLHXVLKXQNSELAAKVMI 671
E + + +++ Q ++++
Sbjct: 154 EGGSRAQKFCALIIQYQGIMETVRILL 180
>AL121986-5|CAI10852.1| 245|Homo sapiens CD1b molecule protein.
Length = 245
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 417 GSSAIVMETLQQLRTQLPSKIPCILSC--HRTGARVGFVREVFTGVEQLRKEFANCPPSN 590
G + V + + + P +I I C H GA V F+R G++ L + A+C PS
Sbjct: 61 GFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 120
Query: 591 EQMQKLYRLLHXVLKXQNSELAAKVMI 671
E + + +++ Q ++++
Sbjct: 121 EGGSRAQKFCALIIQYQGIMETVRILL 147
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,047,433
Number of Sequences: 237096
Number of extensions: 1634232
Number of successful extensions: 3209
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3209
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -